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Supplementary Material for: G. V. Glazko and M. Nei, 2002.  Mol. Biol. Evol.

~~~~~~~~~~~~~~

Orangutan genes used to find orthologous sequences in Species group 11)
for estimating divergence times. *Proteins used for Species group 2
2).

 

Protein name

DNA

protein a value
Alpha globin* 

--

P06635 0.30
Apolipoprotein AF200505 AAG28580 0.99
Beta-nerve growth factor AB037520 BAA90440 0.52
Ribonuclease k6* AF037082 AAB94744 1.76
Pancreatic ribonuclease* -- AAL87051 0.70
Rhesus-like protein* 

AF012425

AAC94962 1.46
C5a anaphylatoxin receptor X97732 CAA66316 1.12
C-X-C receptor 4* AF172231 AAF89351 0.19
Decay-accelerating factor, CD55 S67775 AAC60609 1.94
Sex-determining gene, SRY* X86383 CAA60143 1.49
Alfa-fucosyltransferase, FUT1*  AF111935 AAF42964 0.38
Alfa-fucosyltransferase, FUT2 AB015636 BAA31129 0.39
Histamine H1 receptor AB041383 BAA94468 0.65
Leptin U72873 AAB17092 0.92
Lysozyme*  U76914 AAB41208 0.72
Muscarinic receptor m2 AB041394 BAA94479 0.09
Muscarinic receptor m3 AB041398 BAA94483 0.32
MHC class II M81272 AAD28431 1.09
Beta-2-microglobulin* M30682 AAA88837 0.84
Myoglobin* -- P02148 0.39
Prion* U08305 AAC50093 0.31
Transitional protein AF215719 AAF35858 2.65
5-Hydroxytryptamine receptor 1A AB037532 BAA90452 0.77
5-Hydroxytryptamine receptor 2A AB037516 BAA90436 0.11 
5-Hydroxytryptamine receptor 1F  AB037536 BAA90456 0.34
C-myc protein -- 2122337B 0.29
B-globin* -- 0404170B 0.32
Interferon gamma AF164786 AAD48012 2.13
CMP-N-acetylneuraminic acid hydroxylase AF354634 AAL56238 0.32
 

1)  Species group 1: Humans, chimpanzees, gorillas, orangutans, artiodactyls, mice and rats.
2)  Species group 2: Macaca and marmoset in addition to species group 1. --: Data not available.

 

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| Laboratory of Masatoshi Nei |
| Department of Biology | Eberly College of Science |
| Institute of Molecular Evolutionary Genetics | Penn State |
2003 The Pennsylvania State University
This page was last updated 6/4/12 by T. Mazurczyk.