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Supplementary material for the Web.

Estimation of Divergence Times from Multiple Protein Sequences (manuscript)

Table 4. 11 protein sequence data used for estimation of early divergence time 

 
Protein Human Rat Chicken Drosophila Nematode Fungi (yeast) Plants (Arabidopsis) Protists (Plasmodium falciparum) Eubacteria 
(E. coli)
Intermediary metabolism
L-LACTATE DEHYDROGENASE (EC 1.1.1.27) RDa NP_036727b RD RD RD T50135 RD (maize) AAC46863 RD (Cyanobacterium synechocystis)
ALDEHYDE DEHYDROGENASE (NAD+) (EC 1.2.1.3) RD RD RD AAF52769 RD RD RD (maize) RD (Sauroleishmania tarentolae) RD
PYRUVATE KINASE (EC 2.7.1.40)  RD KIRTPR RD O62619 RD RD RD (soy bean) RD (Trypanosoma brucei) RD
PHOSPHOGLYCERATE KINASE (EC 2.7.2.3)  RD RD I50407 RD RD RD P50318 RD RD
ENOLASE (EC 4.2.1.11)  RD RD RD (duck) RD RD RD RD RD RD
TRIOSE-PHOSPHATE ISOMERASE (EC 5.3.1.1)  RD AAA42278 RD RD RD RD RD (maize) RD (Trypanosoma brucei) RD
Biosynthesis of small molecules
NUCLEOSIDE-DIPHOSPHATE KINASE (EC 2.7.4.6) RD RD AAB99856 RD RD RD RD AAD48446 (Trypanosoma brucei) RD
DIHYDROFOLATE REDUCTASE (EC 1.5.1.3)  RD RD RD AAF55324 Q93341 RD RD RD RD
Macromolecule metabolism
REPLICATION FACTOR C  NP_002905 g11177922
(Mouse)
P53033 P53034 AAB88360 T37746 AAF18689 H71604 AAC07663 (Aquifex aeolicus)
Adaptations to atypical conditions
HEAT SHOCK PROTEIN HSP70  AAD11466 NP_068635 P08106 P11147 T21394 NP_011029 BAB02269 P11144 P04475 (E. coli)
 


a These data were obtained from ftp site ftp://juno.ucsd.edu (R.Doolittle data)
b Accession numbers from Protein Databases

 

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| Laboratory of Masatoshi Nei |
| Department of Biology | Eberly College of Science |
| Institute of Molecular Evolutionary Genetics | Penn State |
2003 The Pennsylvania State University
This page was last updated 6/4/12 by T. Mazurczyk.