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Databases


This page provides links to various Databases developed by members of the Nei laboratory as well as links to the journal abstracts.  Feel free to contact the laboratory of Masatoshi Nei with questions regarding the database information.


#mega
TITLE: alignment file for figure 7a in Su and Nei 2001

#unitD
------------------------------------------------------------
---------------------------------ATGAGCCTCGGGCTCCTGTGCTGTGCG
GCCTTTTCTCTCCTGTGGGCAGGTGGGTCCTGG-GCAGGGCCC-TTGCGTGGATTTCAAG
GCCCATCCCCTTTCCACTGGGGCTGCAGCATCAGTTTTGT---TCTTCTCTGCAGGTCCC
GTGAATGCTGGTGTCACTCAGACCCCAAAATTCCACATCCTGAAGACAGGACAGAGCATG
ACACTGCAGTGTGCCCAGGATATGAACCATGGATACATGTCCTGGTATCGACAAGACCCA
GGCATGGGGCTGAGACTGATTTACTACTCAGCTGCTGCTGGTACTACTGACAAAG---AA
GTCCCCAATGGCTACAATGTCTCTAGATTAAACACAGAGGATTTCCCACTCAGGCTGGTG
TCGGCTGCTCCCTCCCAGACATCTGTGTACTTGTGTGCCAGCAGTTACTCCACAGCGCTA
CAAGGTTGTCTCCTCTCTGCACATAAAGGGAAGTGATGTCACTGTGGGAACTGCCCTGTG
GAGACAAGGACATCCCTCATCCTCCGCTCCTGCTCACAGTGACACTGATCTGGTAAAGCC
CCCATCCTGGTCTGACACTGTCATGGGTACCAGTCTCCTATGCTGGGTGGTCCTGGGTTT
CCTAGGGACAGGTGAGTCCTCAAAACACAAAGTAGTTTCATAT-TTTTTCTGTATGTAGG
TGTGTGTGTGTATGCATGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAT
GACTACAAATGTTTTCCTTATTCTGTTGCCAGATTCTGTTTCCACAGATCACACAGGTGC
TGGAGTCTCCCAGTCTCCCAGGTACAAAGTCACAAAGAGGGGACAGGATGTAACTCTCAG
GTGTGATCCAATTTCGAGTCATGCAACCCTTTATTGGTATCAACAGGCCCTGGGGCAGGG
CCCAGAGTTTCTGACTTACTTCAATTATGAAGCTCAACCAGACAAATCAGGGCTGCCCAG
TGATCGGTTCTCTGCAGAGAGGCCTGAGGGATCCATCTCCACTCTGACGATTCAGCGCAC
AGAGCAGCGG-GACTCAGCCATGTATCGCTGTGCCAGCAGCTTAGCCACAGCATGGCACA
GTGCTTTTACTTTAGGCTGAGAGATCAGAAGGATCA-CAGTGACATCACAGCATACCCCT
CCCATCAGGAAAATCAAGGCCCAGAACTCACTCAGCTCTTTCCCAGGAGGACCAAGCCCT
GAAT-CAGGTGCAGTGCTGCCTGCCCCACTGTGCCATGGGCCCCGGGCTCCTCTGCTGGG
TGCTGCTTTGTCCCCTAGGAGAAGGTGAGTCC-CGGGCACAGGACAGCTGCTCCATTCTC
AGCTT--TCCCACCCCTGTGTCCTCCACTTTACCTTGGGGAGG-ACCTCCAGGCTGTCTC
CAGTGCTCATTATACATCTGCTTTTCCCACAGGCCCAGTGGACGCTGGAGTCACCCAAAG
TCCCACACACCTGATCAAAACGAGAGGACAGCACGTGACTCTGAGATGCTCTCCTATCTC
TGGGCACACCAGTGTGTCCTCGTACCAACAGGCCCTGGGTCAGGGGCCCCAGTTTATCTT
TCAGTATTATGAGAAAGAAGAGAGAGGAAGAGGAAACTTCCCTGATCAATTCTCAGGTCA
CCAGTTCCCTAACTATAGCTCTGAGCTGAATGTGAACGCCTTGTTGCTAGGGGACTCGGC
CCTCTATCTCTGTGCCAGCAGCTTGGCACA------------------------------
-----

#unitC
------------------------------------------------------------
---------------------------------ATGAGCCTCGGGCTCCTGTGCTGTGTG
GCCTTTTCTCTCCTGTGGGCAGGTGGGTCCTGG-GCAGGGCCCCTTGTGTGGATATCAAG
GCCCAGCCCCTTTCCACTGGAGCTGTAGCATCAGCTTTGT---CCTTCCCTGCAGGTCCA
ATGAATGCTGGTGTCACTCAGACCCCAAAATTCCACGTCCTGAAGACAGGACAGAGCATG
ACTCTGCTGTGTGCCCAGGATATGAACCATGAATACATGTATCGGTATCGACAAGACCCA
GGCAAGGGGCTGAGGCTGATTTACTACTCAGTTGCTGCTGCTCTCACTGACAAAGGAGAA
GTTCCCAATGGCTACAATGTCTCCAGATCAAACACAGAGGATTTCCCCCTCAAGCTGGAG
TCAGCTGCTCCCTCTCAGACTTCTGTTTACTTCTGTGCCAGCAGTTACTCCACAGCGCTG
CAAGGCTGTCTCCTCTCTGCACATAAAGGGAAGTGATGTCACTGTGGGAACTGCCCTGTG
GAGACAAGGACATCCCTCATCCTCTGCTGCTGCTCACAGTGACACTGATCTGGTAAAGCC
CTCATCCTGTCCTGACCCTGCCATGGGCACCAGTCTCCTATGCTGGGTGGTCCTGGGTTT
CCTAGGGACAGGTGAGTCCTCAGAACACAAAGTAGTTTCATTTTTTTTTCTGTGTGTAGG
CGTGTGGGCGTGTG----------TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCT
GACGACAAATGTTTTCCTTATTCTGTTGCCAAATTCTATTTCCACAGATCACACAGGTGC
TGGAGTCTCCCAGTCTCCCAGGTACAAAGTCACAAAGAGGGGACAGGATGTAGCTCTCAG
GTGTGATCCAATTTCGGGTCATGTATCCCTTTATTGGTACCGACAGGCCCTGGGGCAGGG
CCCAGAGTTTCTGACTTACTTCAATTATGAAGCCCAACAAGACAAATCAGGGCTGCCCAA
TGATCGGTTCTCTGCAGAGAGGCCTGAGGGATCCATCTCCACTCTGACGATCCAGCGCAC
AGAGCAGCGG-GACTCGGCCATGTATCGCTGTGCCAGCAGCTTAGCCACAGTGTGGCATA
GTGCTTTTACTTTAGGCTGAGAGGTCAGAAGGATCAACAGTGACATCACAGGATACCCCT
CCCATCAGGAAAATCAAGGCCCAGAACTCACTCGGCTCTTCCCCAGGAGAACCAAGCCCT
GAAT-CAGATGCAGTGCTTCCTGTCCCTCTGTGCCATGGGCCCCGGGCTCCTCTGCTGGG
CACTGCTTTGTCTCCTGGGAGCAGGTGAGTCC-TGGGCACAGGACAGCAGCCCCATTCTC
AGCTT--TCCCACCCCTGTGTCCTCCACTTTACCTTGGGGAGG-ACCTCCAGGCTGTC-C
CTGTGCTCATCCTCCATCTGCTTTTCCCACAGGCTTAGTGGACGCTGGAGTCACCCAAAG
TCCCACACACCTGATCAAAACGAGAGGACAGCAAGTGACTCTGAGATGCTCTCCTAAGTC
TGGGCATGACACTGTGTCCTGGTACCAACAGGCCCTGGGTCAGGGGCCCCAGTTTATCTT
TCAGTATTATGAGGAGGAAGAGAGACAGAGAGGCAACTTCCCTGATCGATTCTCAGGTCA
CCAGTTCCCTAACTATAGCTCTGAGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGC
CCTCTATCTCTGTGCCAGCAGCTTGGCACA------------------------------
-----

#unitE
------------------------------------------------------------
---------------------------------ATGAGCATCGGGCTCCTGTGCTGTGTG
GCCTTTTCTCTCCTGTGGGCAGGTGGGTCCTGG--CAGAGCCCCTTGCGTGGATGTCAAG
GCCCATCCCCTTTCCACTGGGGCTGCAGCATCAGCTTTGT---TCTTCTCTGCAGGTCCA
GTGAATGCTGGTGTCACTCAGACCCCAAAATTCCACATCCTGAAGACAGGACAGAGCATG
ACACTGCAGTGTGCCCAGGATATGAACCATGGATACTTGTCCTGGTATCGACAAGACCCA
GGCATGGGGCTGAGGCGCATTCATTACTCAGTTGCTGCTGGTATCACTGACAAAGGAGAA
GTCCCCGATGGCTACAATGTATCCAGATCAAACACAGAGGATTTCCCGCTCAGGCTGGAG
TCAGCTGCTCCCTCCCAGACATCTGTATACTTCTGTGCCAGCAGTTATTCCACAGCGCTG
CAAGCCTGTCTCCTCTCTGCACATAAAGGGAAGTGATGTCACTGTGGGAACTGCCCTGTG
GAGACAAGGACGGCCCTTATCCTCTGCTTCTGTTCACAGTGACACTGATCTGGTAAAGCC
CCCATCCTGGCCTGACCCTGCCATGGGCACCAGGCTCCTCTGCTGGGTGGTCCTGGGTTT
CCTAGGGACAGGTGAGTCCTCAGAACACCAAGTAGTTTCAT---TTTTTCTGTTTGTAGG
TGTGTGTGTGT----------------GAGAGAGTGGTTGTGTGTGTGTGTGTGTATGAT
GACTACAAATATTTTCCTTATTCTGTTGCCAAATTCTATTTCCACAGATCACACAGGTGC
TGGAGTCTCCCAGTCCCCTAGGTACAAAGTCGCAAAGAGAGGACAGGATGTAGCTCTCAG
GTGTGATCCAATTTCGGGTCATGTATCCCTTTTTTGGTACCAACAGGCCCTGGGGCAGGG
GCCAGAGTTTCTGACTTATTTCCAGAATGAAGCTCAACTAGACAAATCGGGGCTGCCCAG
TGATCGCTTCTTTGCAGAAAGGCCTGAGGGATCCGTCTCCACTCTGAAGATCCAGCGCAC
ACAGCAGGAG-GACTCCGCCGTGTATCTCTGTGCCAGCAGCTTAGCCACAGCATGGCACA
GTGCTTTTACTTTAGGCTGAGAGGTCAGAAGGATCA-CAGCGACATCACAGGATACCCCT
CCCATCAGGAAAATGAAGGCCCAGAACTCACTCGGCTCTTCCCCAGGAAGACCAAGCCCT
GAAT-CAGGTGCAGTGCCGCCTGGCCCACTGTGCCATGGGACCCAGGCTCCTCTTCTGGG
CACTGCTTTGTCTCCTCGGAACAGGTGAGTCC-TGGGCACAGGACAGCAGCCCCATTCTC
AGCTT--TCCCACCCCAGTGTCCTCCACTTTACCTTGGGGAGG-ACCTCTGGGCTGTCTC
CTGAGCTCATCCTCCATCTGCTTTTCCTGCAGGCCCAGTGGAGGCTGGAGTCACACAAAG
TCCCACACACCTGATCAAAACGAGAGGACAGCAAGCGACTCTGAGATGCTCTCCTATCTC
TGGGCACACCAGTGTGTACTGGTACCAACAGGCCCTGGGTCTGGGCCTCCAGTTCCTCCT
TTGGTATGACGAGGGTGAAGAGAGAAACAGAGGAAACTTCCCTCCTAGATTTTCAGGTCG
CCAGTTCCCTAATTATAGCTCTGAGCTGAATGTGAACGCCTTGGAGCTGGAGGACTCGGC
CCTGTATCTCTGTGCCAGCAGCTTGGCACA------------------------------
-----

#unitA
------------------------------------------------------------
---------------------------------ATGAGCATCGGCCTCCTGTGCTGTGCA
GCCTTGTCTCTCCTGTGGGCAGGTGGGTCCTGG-GCAGAGCCCCTTGTGTGAATTTCAAG
GCCCAGCGCCTTCCCATTGGGGCTGCAGCATCAGCTTTGTTCTCCTTCTCTGCAGGTCCA
GTGAATGCTGGTGTCACTCAGACCCCAAAATTCCAGGTCCTGAAGACAGGACAGAGCATG
ACACTGCAGTGTGCCCAGGATATGAACCATGAATACATGTCCTGGTATCGACAAGACCCA
GGCATGGGGCTGAGGCTGATTCATTACTCAGTTGGTGCTGGTATCACTGACCAAGGAGAA
GTCCCCAATGGCTACAATGTCTCCAGATCAACCACAGAGGATTTCCCGCTCAGGCTGCTG
TCGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTTACTCCACAGCGCTA
CAAGGCCGTCTCCTCTCTGCACATAAAGGGAAGTGATGTCACTGTGGGAACCGCCCTGTG
GAGACAAGGACGTCACTCATCCTCTGCTCCTGCTCATAGTGACACTGACCTGGTAAAACC
CCCGTCCTGGCCTGACCCTGCCATGGGCACCAGGCTCCTCTGCTGGGTGGTCCTGGGTTT
CCTAGGGACAGGTGAGTCCTTAGAACACAAAGTAGTTTCAGTT-TTTTTCTGTGTGTAGG
CTTGTGTGTGT----------------------------------------GTGTGCGAT
GACTACAAATATTTTCCTTATTCTGTTGCCAAATTCTATTTCCACAGATCACACAGGTGC
TGGAGTCTCCCAGTCCCCAAGGTACAAAGTCGCAAAGAGGGGACGGGATGTAGCTCTCAG
GTGTGATTCAATTTCGGGTCATGTAACCCTTTATTGGTACCGACAGACCCTGGGGCAGGG
CTCAGAGGTTCTGACTTACTCCCAGAGTGATGCTCAACGAGACAAATCAGGGCGGCCCAG
TGGTCGGTTCTCTGCAGAGAGGCCTGAGAGATCCGTCTCCACTCTGAAGATCCAGCGCAC
AGAGCAGGGG-GACTCAGCTGTGTATCTCTGTGCCAGCAGCTTAGCCACAGCGTGGCACA
GTGCTTTTACTTTAGGCTGAGAGGTCAGAAGGGTCA-CAGTGACATCACAGGATACCCCT
CCTATTAGGAAAATCAAGGCCCAGAATTCACTCGGCTCTTCCCCAGGAGGACCAAGCCCT
GAAT-CAGGTGCAGTGCTGCCTGCCCCACTGTGCCATGGGCCCTGGGCTCCTCTGCTGGG
TGCTGCTTTGTCTCCTGGGAGCAGGTGAGTCC-TGGGCACAGGACAGCAGCCCCATTCTC
AGCTT--TCCCACCC--ATGTCCTCCACTTTACCTTGGGGAGG-ACCTCCAGGCTTTCTG
CTGTGCTCATCCTCCATCTGCTTTTCCCACAGGCTCAGTGGAGACTGGAGTCACCCAAAG
TCCCACACACCTGATCAAAACGAGAGGACAGCAAGTGACTCTGAGATGCTCTTCTCAGTC
TGGGCACAACACTGTGTCCTGGTACCAACAGGCCCTGGGTCAGGGGCCCCAGTTTATCTT
TCAGTATTATAGGGAGGAAGAGAATGGCAGAGGAAACTTCCCTCCTAGATTCTCAGGTCT
CCAGTTCCCTAATTATAGCTCTGAGCTGAATGTGAACGCCTTGGAGCTGGACGACTCGGC
CCTGTATCTCTGTGCCAGCAGCTTGGCACA------------------------------
-----

#unitB
------------------------------------------------------------
---------------------------------ATGAGCATCAGCCTCCTGTGCTGTGCA
GCCTTTCCTCTCCTGTGGGCAGGTGGGTCCCGG-ACAGGGCCCCTTGCATAGATTTCAAA
GCCCAGCCCCTTTCCATTGGGGCTGCAGCATCAGCTGTTT---CCTTCTCTGCAGGTCCA
GTGAATGCTGGTGTCACTCAGACCCCAAAATTCCGCATCCTGAAGATAGGACAGAGCATG
ACACTGCAGTGTACCCAGGATATGAACCATAACTACATGTACTGGTATCGACAAGACCCA
GGCATGGGGCTGAAGCTGATTTATTATTCAGTTGGTGCTGGTATCACTGATAAAGGAGAA
GTCCCGAATGGCTACAACGTCTCCAGATCAACCACAGAGGATTTCCCGCTCAGGCTGGAG
TTGGCTGCTCCCTCCCAGACATCTGTGTACTTCTGTGCCAGCAGTTACTCCACAGCGCTA
CAAGACCATCTCCTCTCTGCACATAAAGGGAAGTGATGTTACTGTGGGAACTGCCCTGTG
GAGACAAGGACATTCCTCGTCCTCTGCTCCTGCTCACAGTGACACTGATCTGGTAAAGCC
CCCATCCTGGCCTGACCCTGCCATGGGCACCAGGCTCCTCTGCTGGGTGGTCCTGGGTTT
CCTAGGGACAGGTGAGTCCTCAGAACATTAAGTAGTTTTATTT-TTTCTCTGTGTGTAGG
TGTGTGTGTGT-----------------------T-----TGTGTGTGTGTGTGTGCGAT
GACTACAGATGTTTTCCTTATTCTGTTGCCAAATTCTATTTCCACAGATCACACAGGTGC
TGGAGTCTCCCAGTCCCCAAGGTACGAAGTCACACAGAGGGGACAGGATGTAGCTCCCAG
GTGTGATCCAATTTCGGGTCAGGTAACCCTTTATTGGTACCGACAGACCCTGGGGCAGGG
CCAAGAGTTTCTGACTTCCTTCCAGGATGAAACTCAACAAGATAAATCAGGGCTGCTCAG
TGATCAATTCTCCACAGAGAGGTCTGAGG-ATCTTTCTCCAC-CTGAAGATCCAGCGCAC
AGAGCAAGGGCGACTCGGCTGTGTATCTCTGTGCCAGAAGCTTAGC-ACAGCGTGGCACA
GTGCTTTTACTTTAGGCTGAGAGGTCAGAAGGGTCAACAGTGACATCACAGGATACCCCT
CCCATCAGGAAAATCAAGGCTCAGAACTCACTGGGTTCTTCCCCAGGAGGACCAAGCCCT
GAAT-CAGGTGCAGTGCTGCCTGCCCCACTGTGCCATGGGCCCTGGGCTCCTCTGCTGGG
TGCTGCTTTGTCTCCTGGGAGCAGGTGAGTCC-TGGGCACAGGACAGCAGCCCCATTCTC
AGCTT--TTCCACCC--GTGTCCTCCACTTTACCATGGAGAAG-ACCTCCAGGCTGTCTC
CTGAGCTCATCCTCCATCTGCTTTTCCCACAGGCCCAGTGGACGCTGGAGTCACCCAAAG
TCCCACACACCTGATCAAAACGAGAGGACAGCAAGTGACTCTGAGATGCTCTCCTATCTC
TGGGCACAAGAGTGTGTCCTGGTACCAACAGGTCCTGGGTCAGGGGCCCCAGTTTATCTT
TCAGTATTATGAGAAAGAAGAGAGAGGAAGAGGAAACTTCCCTGATCGATTCTCAGCTCG
CCAGTTCCCTAACTATAGCTCTGAGCTGAATGTGAACGCCTTGTTGCTGGGGGACTCGGC
CCTGTATCTCTGTGCCAGCAGCTTGGCACA------------------------------
-----

#outgroup
AGAATGAGGTCTCAGGATGACTTCCTTGACAGCCCTGTTCGCCTTTCATCAACACACAGA
CCCAGAAGACCTCTCTGTCTTGTAGCATCTGCCATGAGAATCAGGCTCCTGTGCTGTGTG
GCCTTTTCTCTCCTGTGGGCAGGTAAGTCCTGG-GCAGGGCCC-ATGTGTAGATTTCAAG
ACCCAGAGCCTTCCCATTGAGGCTGCAGCATTGGCTTTGTTCTCCTTCTCTGTAGGTCCA
GTGATTGCTGGGATCACCCAGGCACCAACATCTCAGATCCTGGCAGCAGGACGGCGCATG
ACACTGAGATGTACCCAGGATATGAGACATAATGCCATGTACTGGTATAGACAAGATCTA
GGACTGGGGCTAAGGCTCATCCATTATTCAAATACTGCAGGTACCACTGGCAAAGGAGAA
GTCCCTGATGGTTATAGTGTCTCCAGAGCAAACACAGATGATTTCCCCCTCACGTTGGCG
TCTGCTGTACCCTCTCAGACATCTGTGTACTTCTGTGCCAGCAGTGACTCCACAGTGCTG
CACAGCCATCTCCTCTCTGTACATAAATGTCAGTGATGTCACTGTGGGAACTGCTCTGTG
GCGACAAGGACGTCCCTCATCCTCTGCTCCTGCTCACAGTGACCCTGATCTGGTAAAGCT
CCCATCCTGCCCTGACCCTGCCATGGGCACCAGCCTCCTCTGCTGGATGGCCCTGTGTCT
CCTGGGGGCAGGTGAGTCCTCAGAACACCAAGCAATCTCAT-TGTGTCTGTGTATGTCTG
TGTGTGTGTGC--------------------------GTGTGTGTGTGTGTGTGTGTGAT
GACTACAATTGTTTTCCTC---CTGTTCCCAACTTGTATCTCCACAGATCACGCAGATAC
TGGAGTCTCCCAGAACCCCAGACACAAGATCACAAAGAGGGGACAGAATGTAACTTTCAG
GTGTGATCCAATTTCTGAACACAACCGCCTTTATTGGTACCGACAGACCCTGGGGCAGGG
CCCAGAGTTTCTGACTTACTTCCAGAATGAAGCTCAACTAGAAAAATCAAGGCTGCTCAG
TGATCGGTTCTCTGCAGAGAGGCCTAAGGGATCTTTCTCCACCTTGGAGATCCAGCGCAC
AGAGCAGGGG-GACTCGGCCATGTATCTCTGTGCCAGCAGCTTAGCCACAGCATGGCACA
GT-CGCCTCCTTCCTGCT-------CACAA--ACCA-CAGTGACATCACAGTATGCCCCT
CCCACCAGGAAAAGCAAGGCTGAGAATTTA----GCTCTTTCCCAGGAGGACCAAGCCCT
GAGCACAGACACAGTGCTGCCTGCCCCTTTGTGCCATGGGCTCCAGGCTGCTCTGTTGGG
TGCTGCTTTGTCTCCTGGGAGCAGGTGAGTCCCTGCAGACAGGATAGC-GCCCCATTCTG
AGCCTGTCCTCACCCCTGTGTCTTCCACTTTACCATGGGGAGGCACCACCAGGCTGTCTC
CGGTGCTCATTCTCCATCTGCTTTTCCCACAGGCCCAGTAAAGGCTGGAGTCACTCAAAC
TCCAAGATATCTGATCAAAACGAGAGGACAGCAAGTGACACTGAGCTGCTCCCCTATCTC
TGGGCATAGGAGTGTATCCTGGTACCAACAGACCCCAGGACAGGGCCTTCAGTTCCTCTT
TGAATACTTCAGTGAGACACAGAGAAACAAAGGAAACTTCCCTGGTCGATTCTCAGGGCG
CCAGTTCTCTAACTCTCGCTCTGAGATGAATGTGAGCACCTTGGAGCTGGGGGACTCGGC
CCTTTATCTTTGCGCCAGCAGCTTGGCACAGCCCTACAAAGCCAACCACATTCTGTGCAC
AAACC
 

Home | CV | Databases | IMEG Seminars | MEP-online | People | Publications | SoftwareText only version


| Laboratory of Masatoshi Nei |
| Department of Biology | Eberly College of Science |
| Institute of Molecular Evolutionary Genetics | Penn State |
2003 The Pennsylvania State University
This page was last updated 6/5/12 by T. Mazurczyk.