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Databases


This page provides links to various Databases developed by members of the Nei laboratory as well as links to the journal abstracts.  Feel free to contact the laboratory of Masatoshi Nei with questions regarding the database information.


#mega
TITLE : alignment file for figure 3 in Su et al. 1999 

#Mouse_V4      NLEERIMSIT KLEGSSAI MTCDIHWYRF QKGRAPEHLL YLEKYHVYE- GPDKRYKFVL RNVEESDSAL YYCASW
#Mouse_V5.1    QLEQTELSVT RETDESAQ ISCIIHWYRQ KAKK-FEYLI YNKKIEASKD FQSSTSTLKI NYLKKEDEAT YYCAVW
#Mouse_V1      WISQDQLSFT RRPNKTVH ISCKVHWYQL KEGEPLRRIF YHSRLEIDE- KDDGTFYLII NNVVTSDEAT YYCACW
#Mouse_V2      LTSPLGSYVI KRKGNTAF LKCQIHWYQE KPGQRLQRML CDERYEARTW QSDLSSVLTI HQVTEEDTGT YYCACW
#Mouse_V3      KLEQPEISIS RPRDETAQ ISCKVHWYRQ KPNQGLEFLL YYKKMEASKN PSASTSILTI YSLEEEDEAI YYCSYG
#Mouse_V5.2    QLEQTELSVT RATDESAQ ISCIIHWYRQ KPNQQFEYLI YNKKIEASKD FKSSTSTLKI NYLKKEDEAT YYCAVW
#Human_V1      NLEGRTKSVI RQTGSSAE ITCDIHWYLH QEGKAPQRLQ Y-PGKYYTYA STRNNLRLIL RNLIENDSGV YYCATW
#Human_V2      HLEQPQISST KTLSKTAR LECVVYWYRE RPGEVIQFLV SSGKFEVDRI PETSTSTLTI HNVEKQDIAT YYCALW
#Human_V3      KVEQFQLSIS TEVKKSID IPCKIHWYRQ KPNQALEHLI YSNKVEARKN SQTLTSILTI KSVEKEDMAV YYCAAW
#Human_V4      QLEQPEISIS RPANKSAH ISWKIHWYWQ KPNKGLEYLL HTKKLEVSKN AHTSTSTLKI KFLEKEDEVV YHCACW
#Chicken_V1.5  LLQQHQLSAT RERSKTVT IECKIHWYRQ MPAGAPDRLL YKNKYTSSKM -GTKICTFSV QDIGDDDEGT YYGAYW
#Chicken_V1.4  LLQQHQLSAT RERSKTVT IECHIHWYRQ MPAGAPERLL YKNKYTSSKM -GNKICTLSV LNIRDDDEGT YYCAYR
#Chicken_V1.3  LLQQHQLSAT RERSKTVT IECKIHWYRQ MPAGAPERLL YKNKYWSYKS -ENKICTLSV LNIRDDDEGT YYCAYR
#Chicken_V3.8  PVQSPAERRL VEGS-SVT MTCQVHWYKQ LPGEPPKRIL YRQKFQVQR- -NPSNSVLTI KKSTRRDTGT YYCAYW
#Chicken_V3.4  PVQSPAERRL VEGS-SVT MTCQVHWYRQ LPGEPPKRIL YSQKFQVQR- -NASDTVLII KKTTRRDTGT YYCAYW
#Chicken_V3.3  PMQRPSERRL VEGS-SVT MTCQVHWYRQ LPGEPPKRIL YRQKFQVQR- -NPSNSVLII TKSTRRDTGT YYCAYW
#Chicken_V2.9  IPIQSPVSIT KSQG-SIH LQCHIHWYQL KENKPPERLL FENKYMADKV SSQNLSILTI NHVSPDDDAT YYCAYW
#Chicken_V2.8  TPIQSPVSIT MSQG-NTD LKCHIHWYQQ KENKAPVRMM YRHRYRIQTI SRQKLCTLTI RNVIPDDAAT YYCA--
#Chicken_V2.7  TPIQSPVSIT MSQG-NTD LKCHIHWYQQ KENKAPVRMM YRHRYRIQTI SRQKLCTLSI RNVIPDDAAT YYCAYW
#Chicken_V1.8  LLQQRQPSAT RERSKTVT IQCQIHWYRQ MPAKAPERLL YKNKYLSYK- SENNVCTLSV QDIGDDDKGT YYCAY-
#Cattle_133    QVSSNLMFIT SNTGETAS FPCDIHLYKH EEGMAPRRLL YEQNTMSIM- GTGRSYTFTI VNLQASDSGI YYCAIW
#Cattle_131    NAKGAQMSVT GKTWETAS FTCDIHLYKQ QEGMAPQRLF YKEKYSVYK- VTGRSYRFAI LNLEDSDSGM YYCAVW
#Cattle_130    QVSSNLMLIT SKTGETAS FPCDIHLYKH EEGTATRRIL YGTKYQVYK- GTGRSYTFAI LNLQESDSGI YYCAIW
#Cattle_129    QVSSNLMLIT SNTGETAS FPCDIHLYKH EEGMAPRRLL YGTKYHVYK- GTGRSYTFTI VNLQASDSGI YYCTSW
#Cattle_126    QVYSNLMLIT SKTGETAS FPCDIHLYKH EEGTAPRRLL YGTKYQVYK- GTGRSYTFAI LNLQASDSGI YYCAIW
#Cattle_119    NAKGAQMSVT GKTWETAS FTCDIHLYKQ QEGMAPRRLF YKEKYSVYK- VTGRSYRFAI LNLEDSDSGM YYCAVR
#Cattle_186    KVEQAQISLS TEAKKSID IHCKVHWYRQ KLNQVLEHLA Y-NKIEARKD ARMFTSTLTV NFIEKEDVGI YYCAGW
#Cattle_187    KVEQAQISLS TEAKKSIN IHCKVYWYRQ KKNQALEHLV Y-NKIEARKD ARMFTSTLTV NFIEKEDVGI YYCAGW
#Cattle_188    TLVQTEVSVT GTREKSII MSCKIHWYRQ KPDQGLEQLL FKNKLEARKD KPSSTSTLKI SFLEKEDEAT YYCAGW
#Rabbit_V2.1   KVEQSQISVS AEVQKSVA IFCEIHWYRQ KPNQALEHLI QRNKVEAEKA PQNSTSILTV NFIEKGDVAT YYCAGW
#Rabbit_V1.4   NSEKTMTVVT KPTGSSVA VTCSIHWYRY QEGKAPQRLL YTEKYQAYK- SIQGSYNVFL RNLGRDDSGV YYCAVW
#Rabbit_V1.1   NSEKTMTVVT KPTGSTVT VTCSIHWYRF QEGKAPQRLL YPVKYHAFR- GTK-ICNFVL QNLEESDSGV YYCASS
#Rabbit_V1.3   NSEKTMTVVT KPTGSSVA VTCSIHWYRF QEGKAPQRLL YAGKYEASK- STQGCYNVFL RNLGRDDSGV YYCAVW
#Rabbit_V1.2   NSEKTMTVVT KPTGSSAT VTCSIHWYRF QEGKAPQRIL YAGKYQASK- STQGSYNVVL RNLGRDDSGV YYCAVW
#Sheep_V5.1    QVSSNLMLIT RKTGETAS FPCDIHLYKH EEGMAPRRLL YGTKYHVYK- GTGRSYTFAI LNLQASDSGI YYCAIW
#Sheep_V5.2    QVSSNLMLIT RKTGETAS FPCDIHLYKH EEGMAPRRPL YGTKYHVYK- GTGSSYTFTM VNLQASDSGI YYCAIW
#Sheep_V3      KVEQAQISPS TEVKKSIT IHCKVYWYRQ KRHQALEHLV Y-NKIEARKD ARMFTSTLTV NFVEKEDVGI YYCAGW
#Sheep_V2.2    NMEGDRMSIT RAAGSSTV IPCDIHWYKF QEG-IPRGLL Y-PGKYHCYE GTDKIYKFVI SSLQESDSGV YHCAVW
#Sheep_V2.1    NMGEDKLSVT RATGSSVV IDCDIHWYKF QEGTVPRRLL Y-EGKYHVYK GTGKSYTFVI SNLQESDSGT YYCAVW
#Sheep_V2.3    NMEGEKMSIT KAAVPFVE IICDIHWYKY QEGTAPRRLL Y-EGKYQVYK --EKSYTFAI SNLQESDSGM YYCAVW
#Sheep_V2.4    NMEREKMSIT KAAVPFVE IICDIHWYKH QEGTAPRRLL Y-EGKYKVYK --EKSYTFAI SNLQESDSGM YYCAVW
#Sheep_V1.1    NAKGAQMSVT AKTWDTTS FTCDIHLYKQ QEGMAPRRLF YKAKYSVYKG AAGRSYRFAI LNLEHSDSGT YYCAVW
#Sheep_V6      RLSQRSVMVG SAGG-AVT MPCHVHWFRQ LEGQAPERLL NGDKVSAARG GDGKSCTMSL RKLAKSDEGL YYCAAW
#Sheep_V4      --------ST RRPDRTVH ISCKVHWYQE KEGEPLKRIL YNSRLEMDNK -KNGIFYLII NNVVKSDEAT YYCACW
 

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| Laboratory of Masatoshi Nei |
| Department of Biology | Eberly College of Science |
| Institute of Molecular Evolutionary Genetics | Penn State |
2003 The Pennsylvania State University
This page was last updated 6/5/12 by T. Mazurczyk.