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Databases


This page provides links to various Databases developed by members of the Nei laboratory as well as links to the journal abstracts.  Feel free to contact the laboratory of Masatoshi Nei with questions regarding the database information.


#mega
TITLE : alignment file for figure 2 in Su et al. 1999 

#Chicken_V1.1 GAL-QQTP- DMIVRLGDSL TLNCSMLWYK LPVGATLQ LIVFKSRFQS SGTKEKSLSM AIDHVLLNDS GTYFCAK
#Chicken_V2.3 ARAEINQPS VLVLKEDENA TLGCSMYWYL QQPGKGLQ LIYIHTGYEA KRSSREVFHL DIISAKKNHS AIYFCAS
#Cattle_123   GALVSQQPR RAVSKSGASV TIECRMFWYR QFPKRGLV LMANKDKIPI SQQNLTFSSL TVTRVDPADS SLYFCGA
#Cattle_122   LALSSLSSP AAVSKSGASV TIECRMFWYR QFPKRGLV LMANKDKFPI SQPDRTFSSL MVISVDPTDS SLYFCSA
#Rabbit_V9    DTEVTQTPR HLLKGKAQTA KMDCVVYWYR KKPEEELK FLVINERFSA QCPANSPCSV EIQSTDLGDS ALYFCAS
#Cattle_129   DTGVTQTPR NRIANTGKST VLECSMYWYR QDPGRGLR LIYVSDGYNV SRKEKAKFSL YLEPATPSQT AIYFCAT
#Cattle_125   AGGVTQTPK YLLKKEGGAV TLECEMYWYR QDPGLGLR QIFIAKGYSA SREKKPFFPL TVTSAQKNQT ALYLCAA
#Cattle_126   DAQVTQTPR YLVKRRGEKV VIECIMFWYR QDPALGLR LLHVPHGYSV SRKKKESFPL TLASATTNQT SMYLCAS
#Cattle_124   GTLVSQKPS RAICQRGTSV MIECQMYWYC QLPGQSLV LMATDNKFPI SRPKQAFSTL TVSNASSEDS SSYFCSA
#Rabbit_V8    MAGVIQTPR HTVTEKGQAV TLRCELFWYR QTSGQGLE FMIPKDRFSA IMPNASLSTL KIQPTECQDS AVYFCAS
#Rabbit_V7.1  EAGVTQTPR HLIQTRGQQV SLRCTVFWYQ QVLGQGLQ FLFVSGRFSA HQFPDFSSEM NVSALELQDS AVYLCAS
#Rabbit_V6    GVLVSQKPI RDICQRGSSI MIQCQMLWYR QLPGQSLI LIATKDKFPI TRPNLTFSTL TVSDVSPEDN GLYLCSF
#Rabbit_V5    KAEVTQTPR YVIKRRGEKV LLECSMYWYR QDPGLGLQ LIYASEGYDV SRKKKPNFSL ILASASTNHT STYHCAS
#Rabbit_V22   DPGVIQTPS HQVTKIGQGV TLRCDFYWYR QILGQKMD FLVFSDRFSI ERPDGSYLIL KIQPTQLGDS AVYLCAS
#Rabbit_V2    GALVLQNPS RAVCQSGASV RIECRVFWYR QLPKQSFM LMATKAKFPI NHPNATYSSL EVTNTQPEDI GFYFCGA
#Rabbit_V10   AQTIHQWPA FRVQLVGSPL SLQCTLYWYR QAAEGSLQ ALFGPQNLSA SRPQDDQFIL SSPKLLLSYS CFYLCAW
#Rabbit_V44   DTKITQTPR HLVMGTANKK SLKCEMYWYK QNAPKPPE LMFVPSHFSP ECPENSRLLL HLANLQPGDS AVYLCAS
#Sheep_V3.1a  DAQVTQTPR YLVKRRGEKV LIECMMFWYR QDPALGLR LLHVPYGYSV SRTKKKSFSL TLESATTNQT SMYLCAS
#Sheep_V2.1   GAVVSQQPR RAVSKSGASV TIECRVFWYR QFPKRGLV LMANKDKLPI SQPNLTFSSL MVTNVDPADS SLYFCGA
#Sheep_V1.5   DSEVTQTPK FLTKSRKQQV TLRCSVYWFQ QALGQGPQ FLVMSDRFSG Q---QSGSEL NLTSLELMDS ALYLCAS
#Sheep_V22.1  GAMVIQNPR YLVTGLGKPV TLSCSMYWYQ QKPSQAPK LLLTSENFQS SRPNTSLCSL DIRSAGLGDS AVYLCAS
#Sheep_V17.1  PLLSIQTPK YLLKKEGGAV TLECEMYWYR QDPGLGLR RIFIAKGYSA SREKKPFFPL TVTSAQKNQT ALYLCAA
#Sheep_V15.1  DTGVTQTPR NRIAITGNST VLECSMYWYR QDPGQGLR LVYVSAGYNV SRKEKAKFSL YLEPATPNQT AIYFCAS
#Sheep_V13.1  DATVIQFPR HRILEAEKEF TLQYSMYWYR QDPGFGLQ LIYVPEGYHV SRDELERFPL TLKSASPNQT SVYFCAS
#Sheep_V12.1  HAGVTQDPR FQVVRRGQST TLYCTMYWYR QDLGHGLR LIHVPEGYSV SRPSTEDFPL TLKSANHSQT SVYFCAS
#Sheep_V10.1  DTEVTQRPS HLIKGKDQKA KMDCVVYWYR KKPEGAFG FLVFKQRFSA ECPQNSPCSL EIKSTKAADS ALYFCAS
#Sheep_V8.1   NLGVTQTPR HEVTEKGQAV TLSCELYWYR QTSMRGLE LLIPKDRFSA KMPNASFSTL KIQPTDPGDS ATYLCAS
#Sheep_V7.1   DPGITQIPK YLVMGMTDRK SLKCEMYWYK QSAQKPPE LMFVPSRFWP ECPDSSQCRL DLSAPKPQDS AVYLCAS
#Sheep_V6.1   AGVVSQSPG YRVAGRSQNV TLRCDLYWYR QMLGQGPE YLTPKNRFSA ERPESTYSYL KIQPVEPKDS AVYLCAS
#Sheep_V4.1b  GALLSQKPS RAIRQRGTSM MIECQMYWYR QLPGQSLV LMATEDKFPI SRPNLAFSTL TVSNASSEDS SSYFCSA
#Mouse_V6     -GIITQTPK FLIGQEGQKL TLKCQMYWYR QDSGKGLR LIYLSEGYDA SREKKSSFSL TVTSAQKNEM AVFLCAT
#Mouse_V14    AQTIHQWPV AEIKAVGSPL SLGCTLYWYW QATGGTLQ QLFVQLNLSA SRPKDDQFIL STEKLLLSHS GFYLCAW
#Mouse_V3     NSKVIQTPR YLVKGQGQKA KMRCIVFWYQ QNKNNEFK FLITEKRFSA ECPSNSPCSL EIQSSEAGDS ALYLCAS
#Mouse_V4     DPKIIQKPK YLVAVTGSEK ILICEMYWYR QSAKKPLE FMFASSRFQP QSSKKNHLDL QITALKPDDS ATYFCAS
#Mouse_V9     DTTVKQNPR YKLARVGKPV NLICSMYWYQ KKPNQAPK LLLTFEKFQS SRPNNSFCSL YIGSAGLEYS AMYLCAS
#Mouse_V5     NSGVVQSPR YIIKGKGERS ILKCIVAWYQ QTQGQELK FFILPSRFSV QQFDDYHSEM NMSALELEDS AVYFCAS
#Mouse_V8     EAAVTQSPR SKVAVTGGKV TLSCHMYWYR QDTGHGLR LIHIPDGYKA SRPSQENFSL ILELASLSQT AVYFCAS
#Mouse_V1     NTKITQSPR YLILGRAN-K SLECQMYWYK QSAEKPPE LMFVPSRFIP ECPDSSKLLL HISAVDPEDS AVYFCAS
#Mouse_V2     VTLLEQNPR WRLVPRGQAV NLRCIMSWYQ QDLQKQLQ WLFPGADYLA TRVTDTELRL QVANMSQGRT LYCTCSG
#Mouse_V13    EAGVTQSPR YAVLQEGQAV SFWCDLYWYQ QPRDQGPQ LLVPSDRFSA VRPKGTNSTL KIQSAKQGDT ATYLCAS
#Mouse_V17    VAGVTQTPR YLVKEKGQKA HMSCSFYWYQ QNQKQELT FLIVKKRFSA KCSSNSRCIL EILSSEEDDS ALYLCAS
#Mouse_V11    NAGVIQTPR HKVTGKGQEA TLWCEVFWYR QTIVQGLE FLTPKERFSA QMPNQSHSTL KIQSTQPQDS AVYLCAS
#Mouse_V7     DMKVTQMSR YLIKRMGENV LLECGMYWYR QDPGLGLQ LIYIPKGYRV SRKKREHFSL ILDSAKTNQT SVYFCAQ
#Mouse_V16    GPKVLQIPS HQIIDMGQMV TLNCDFYWYK QILGQQME FLVFKDQFSV ERPDGSYFTL KIQPTALEDS AVYFCAS
#Mouse_V15    GALVYQYPR RTICKSGTSM RMECQVAWYR QSPQKTFE LIATQEKFPI SHPNLSFSSM TVLNAYLEDR GLYLCGA
#Mouse_V19    DSGVVQNPR HLVKGKEQKA KMDCTVYWYY KKPGEELK FLVIGKNISA KCPAKKPCTI EIQSSKLTDS AVYFCAS
#Mouse_V18    SVLLYQKPN RDICQSGTSL KIQCVMFWYQ QFQEQSLM LMATKDKFPI SRPNLTFSTL TVNNARPGDS SIYFCSS
#Mouse_V10    ETAVFQTPN YHVTQVGNEV SFNCKMYWYK QDSKKLLK IMFVPRRFSP QSSDKAHLNL RIKSVEPEDS AVYLCAS
#Mouse_V20    DAAVTQKPR YLIKMKGQEA EMKCIVFWYQ QKQSKELK FLIVKERFSA VCPSSSLCSL GIRTCEAEDS ALYLCSS
#Human_V22    EPEVTQTPS HQVTQMGQEV ILRCVFYWYR QILGQKVE FLVFDDQFSV ERPDGSNFTL KIRSTKLEDS AMYFCAS
#Human_V9     DTAVSQTPK YLVTQMGNDK SIKCEMYWYK QDSKKFLK IMFVPNRFSP KSPDKAHLNL HINSLELGDS AVYFCAS
#Human_V7     ETGVTQTPR HLVMGMTNKK SLKCEMYWYK QKAKKPPE LMFVPSRFSP ECPNSSLLNL HLHALQPEDS ALYLCAS
#Human_V5     KAGVTQTPR YLIKTRGQQV TLSCSVSWYQ QTPGQGLQ FLFFPGRFSG RQFSNSRSEM NVSTLELGDS ALYLCAS
#Human_V13    NAGVTQTPK FQVLKTGQSM TLQCAMYWYR QDPGMGLR LIYVPNGYNV SRLNKREFSL RLESAAPSQT SVYFCAS
#Human_V6     GAGVSQTPS NKVTEKGKDV ELRCDLYWYR QSLGQGLE FLIPSDRFSA ERTGGSVSTL TIQRTQQEDS AVYLCAS
#Human_V1     DSGVTQTPK HLITATGQRV TLRCSVYWYQ QSLDQGLQ FLIILERFSA QQFPDLHSEL NLSSLELGDS ALYFCAS
#Human_V12    DAEITQSPR HKITETGRQV TLACHMFWYR QDLGHGLR LIHVSDGYSV SRSNTEDLPL TLESAASSQT SVYFCAS
#Human_V21    EAEVAQSPR YKITEKSQAV AFWCDLYWYR QILGQGPE LLVPKDRFSA ERLKGVDSTL KIQPAELGDS AMYLCAS
#Human_V23    AAGVIQSPR HLIKEKRETA TLKCYVYWYQ QGPGQDPQ FLIIPDRFSA QQFSDYHSEL NMSSLELGDS ALYFCAS
#Human_V8     DAGIIQSPK HEVTEMGQEV TLRCKLFWYR QTMMRGLE LLIPEDRFSA KMPNASFSTL KIQPSEPRDS AVYFCAS
#Human_V16    EAGVTQFPS HSVIEKGQTV TLRCDLYWYR RVMGKEIK FLLPNNRFLA ERTGGTYSTL KVQPAELEDS GVYFCAS
#Human_V24    DAMVIQNPR YQVTQFGKPV TLSCSMYWYQ QKSSQAPK LLFTPDNFQS RRPNTSFCFL DIRSPGLGDT AMYLCAT
#Human_V18    NAGVMQNPR HLVRRRGQEA RLRCSVYWYR QLPEEGLK FMVPKERFSA EFPKEGPSIL RIQQVVRGDS AAYFCAS
#Human_V17    DGGITQSPK YLFRKEGQNV TLSCEMYWYR QDPGQGLR LIYIAEGYSV SREKKESFPL TVTSAQKNPT AFYLCAS
#Human_V2     GAVVSQHPS WVICKSGTSV KIECRMFWYR QFPKQSLM LMAEKDKFLI NHASLTLSTL TVTSAHPEDS SFYICSA
#Human_V15    DADVTQTPR NRITKTGKRI MLECSMYWYR QDPGLGLR LIYISDGYSV SRQAQAKFSL SLESAIPNQT ALYFCAT
#Human_V11    EADIYQTPR YLVIGTGKKI TLECSMYWYQ QDPGMELH LIHLSSESTV SRIRTEHFPL TLESARPSHT SQYLCAS
#Human_V14    EAQVTQNPR YLITVTGKKL TVTCSMSWYR QDPGLGLR QIYVPEGYKV SRKEKRNFPL ILESPSPNQT SLYFCAS
#Human_V3     DVKVTQSSR YLVKRTGEKV FLECVMFWYR QDPGLGLR LIYIPEGYSV SREKKERFSL ILESASTNQT SMYLCAS
#Human_V4     SAVISQKPS RDICQRGTSL TIQCQMFWYR QQPGQSLT LIAVIDKFPI SRPNLTFSTL TVSNMSPEDS SIYLCSV
#Human_V20    SQTIHQWPA GQTVQPVGSP SLECTLYWYR QAAGRGLQ LLFVPQNLSA SRPQDRQFIL SSKKLLLSDS GFYLCAW
#Human_V25    GEEVAQTPK HLVRGEGQKA KLYCAVFWYQ QVLKNEFK FLIPKERFSA KCLPNSPCSL EIQATKLEDS AVYFCAS
#Human_V26    EPGVSQTPR HKVTNMGQEV ILRCDVHWYR QNLRQEMK LLIPKERFTA ERPNGTSSTL KIHPAEPRDS AVYLYSS
#Human_V19    HAKVTQTPG HLVKGKGQKT KMDCTVYWYQ QNQNKEFM LLIHKKRFSS QCPKNAPCSL AILSSEPGDT ALYLCAS
#Human_V10    DTKVTQRPR LLVKASEQKA KMDCVVYWYR KKLEEELK FLVINERFLA QCSKNSSCTL EIQSTESGDT ALYFCAS
 

Home | CV | Databases | IMEG Seminars | MEP-online | People | Publications | SoftwareText only version


| Laboratory of Masatoshi Nei |
| Department of Biology | Eberly College of Science |
| Institute of Molecular Evolutionary Genetics | Penn State |
2003 The Pennsylvania State University
This page was last updated 6/5/12 by T. Mazurczyk.