Home | CV | Databases | IMEG Seminars | MEP-online | People | Publications | SoftwareText only version


Databases


This page provides links to various Databases developed by members of the Nei laboratory as well as links to the journal abstracts.  Feel free to contact the laboratory of Masatoshi Nei with questions regarding the database information.


#mega
TITLE: alignment file for figure 1 in Su et al. 1999

#Chicken_AV611 AQVQQEP SAETSEGTGI NITCSYIQW YRQLPGRAPT FLVPDPAG QLSVSADRLS --SVLCLTR PGLADAAVYY CT
#Chicken_AV612 AQVQQEP SAETSEGTGI NITCSYIHW YRQLPGRAPT FLVPDPAG WLSVSADRRS --SALWLTP PRLGDAAVYY CA
#Chicken_AV613 AQVQQDS SAETSEGTGI NITCSVIQW YRQFPGRGPA FLVPDPEG RLWVSADRRS --SALWLDR PRLGDAAVYY CA
#Cattle_AV011  -SGAEPA SLPVPEGAAA SLGCTYFTW YRQYPGKGPE FLLDKEEG KFTAQSNKTN KHVSLRIRD SEPSDSATYL CA
#Cattle_AV012  TVEQSPA SLPVPEGAAA SLRCTYFTW YRQYPGKRPE FLVNKEEG KFTAQSNKTS KHVSLRIRD SEPSDSATYL CA
#Cattle_AV013  KVEQSPG VLTLQEGRNS SLICNYVQW FQQNPDGRLI SLFMQQKG RLKSTINSKE RYSQLYIRD SQPGDSATYF CA
#Cattle_AV014  SVTQPDD HIAVSE-EPS GAEVQLLFW YIQYPNQGLQ LLLVSGIK GFEAEFRNSE TSFHLRKIP AHWKDSAKYF CA
#Cattle_AV015  KVEQSPS VLSLQEGANS TLRCNFVQW FQQNPGGALT TLFTKKNE RMSSTVNSKE RYSTLHITA SQLEDAATYL CA
#Cattle_AV016  QVFQSPT VVSL-EGAVA EISCNDFLW YFHFPGFAPR LLIPSQQG RYNMTYERFS --SSLLILQ VQTADAGVYY CA
#Cattle_AV017  AKTSQPI FIDSYEGQEV NISCNHILR YVKVPHPGTK FIIENEVA SLLIPPDRKF --STLSLPQ ASLRDTAVYY CI
#Human_AV5     KIEQNSE ALNIQEGKTA TLTCNYLQW YRQDPGRGPV FLLEKRKE RLKVTFDTTL KQSLFHITA SQPADSATYL CA
#Human_ADV17   QVKQSPQ SLIVQKGGIP IINCAYFPW YQQFPGKGPA LLIEKKEG RFTISFNKSA KQFSLHIMD SQPGDSATYF CA
#Human_AV22    SVTQMEG PVTLSEEAFL TINCTYLFW YVQYPGEGLQ LLLKGSNK GFEATYRKET TSFHLEKGS VQVSDSAVYF CA
#Human_AV32    QVMQIPQ YQHVQEGEDF TTYCNSIQW YKQRPGGHPV FLIVKKQK RLTFQFGEAK KNSSLHITA TQTTDVGTYF CA
#Human_AV10    LLEQSPQ FLSIQEGENL TVYCNSLQW YRQEPGEGPV LLVVKKLK RLTFQFGDAR KDSSLHITA AQTGDTGLYL CA
#Human_AV1     SVTQLGS HVSVSEGALV LLRCNYLFW YVQYPNQGLQ LLLVKGIN GFEAEFKKSE TSFHLTKPS AHMSDAAEYF CA
#Human_AV2     EVEQNSG PLSVPEGAIA SLNCTYFFW YRQYSGKSPE LIMDKEDG RFTAQLNKAS QYVSLLIRD SQPSDSATYL CA
#Human_AV7     QSLEQPS EVTAVEGAIV QINCTYLSW YQQHDGGAPT FLSLEETG RFSSFLSRSD SYGYLLLQE LQMKDSASYF CA
#Human_AV8     NVEQHPS TLSVQEGDSA VIKCTYFPW YKQELGKRPQ LIIEKKDQ RIAVTLNKTA KHFSLQIAA TQPGDSAVYF CA
#Human_AV3     QGEEDPQ ALSIQEGENA TMNCSYLQW YRQNSGRGLV HLIEKHSG RLRVTLDTSK KSSSLLITA SRAADTASYF CA
#Human_AV9     RVTQPEK LLSVFKGAPV ELKCNYLFW YVQYSRQRLQ LLLRESIK GFTADLNKGE TSFHLKKPF AQEEDSAMYY CA
#Human_AV11    QVFQ-PS TVASSEGAVV EIFCNHFFW YLHFPGCAPR LLVPSQQG RYNMTYERFS --SSLLILQ VREADAAVYY CG
#Human_AV16    SVAQPED QVNVAEGNPL TVKCTYLFW YVQYPNRGLQ FLLVKGSY GFEAEFNKSQ TSFHLKKPS ALVSDSALYF CA
#Human_AV18    NVEQGPQ SLHVQEGDST NFTCSFLHW YRWETAKTPE ALFKKKKG RISATLNTKE GYSYLYIKG SQPEDSATYL CA
#Human_AV19    EVEQSPQ NLTAQEGEFI TINCSYLHW LQQHPGGGIV SLFKKKHG RLIATINIQE KHSSLHITA SHPRDSAVYI CA
#Human_AV20    KTTQ-PI SMDSYEGQEV NITCSYITW YQQFPSQGPR FIITNEVA SLFIPADRKS --STLSLPR VSLSDTAVYY CL
#Human_ADV21   QVKQSP- SLSVQEGRIS ILNCDYFLW YKKYPAEGPT FLIKNEDG RFTVSLNKSA KHLSPCIVP SQPGDSAVYF CA
#Human_AV13    QVEQSPP DLILQEGANS TLRCNFLQW FHQNPWGQLI NLFTKQNG RLSATTVATE RYSLLYISS SQTTDSGVYF CA
#Human_ADV14   TVTQSQP EMSVQEAETV TLSCTYLFW YKQPPSRQMI LVINATEN RFSVNFQKAA KSFSLKISD SQLGDTAMYF CA
#Human_AV23    EVTQIPA ALSVPEGENL VLNCSFLQW FRQDPGKGLT SLLEQTSG RLNASLDKSS GRSTLYIAA SQPGDSATYL CA
#Human_AV24    QVEQSPQ SLIILEGKNC TLQCNYLRW YKQDTGRGPV SLTTKSNG RYTATLDADT KQSSLHITA SQLSDSASYI CV
#Human_AV25    QLNQSPQ SMFIQEGEDV SMNCTSWLW YKQDPGEGPV LLILTSNG RLTAQFGITR KDSFLNISA SIPSDVGIYF CA
#Human_AV26    ELEQSPQ SLIVQEGKNL TINCTSLYW YKQKYGEGLI FLMEKSHE KITAKLDEKK QQSSLHITA SQPSHAGIYL CG
#Human_AV29    QPVQSPQ AVILREGEDA VTNCSSVHW YRQKHGEAPV FLMQMRRE KISASFNEKK QQSSLYLTA SQLSYSGTYF CG
#Human_ADV28   KVVQSPQ SLVVHEGDTV TLNCSYLQW YKQE-KKAPT FLFEKKSG RLSSILDKKE LFSILNITA TQTGDSAVYL CA
#Human_AV30    QVTQSPE ALRLQEGESS SLNCSCLFW YRQDPGKGPE FLFGEEKE RLKATLTK-- KESFLHITA PKPEDSATYL CA
#Human_AV31    SVKQT-G QITVSEGASV TMNCTYLFW YVEYPSKPLQ LLQMENSK NFGGGNIKD- KNSPIVKYS VQVSDSAVYY CL
#Human_AV12    KVTQAQT EISVVEKEDV TLDCVYLFW YKQPPSGELV FLIIEISG RYSWNFQKST SSFNFTITA SQVVDSAVYF CA
#Human_ADV6    KITQTQP GMFVQEKEAV TLDCTYLFW YKQPSSGEMI FLITATEG RYSLNFQKAR KSANLVISA SQLGDSAMYF CA
#Human_AV4     KTTQ-PP SMDCAEGRAA NLPCNYVYW YRQIHSQGPQ NIIENEMA SLIITEDRKS --STLILPH ATLRDTAVYY CI
#Rabbit_AV885  SVTQTEG PVILSEGSSL TLNCNYLFW YVQYLHEGPQ LLLRMEHQ GFHATFVKKD SSFHLHKSS LQLSDSAVYY CA
#Sheep_AV622   DVSQSPE ALSVREGDSL VLNCSYLQW FRQDPGKGLI SLLEQTSG RITVSLDKSS RHSALYIAT SQRSDSTTYL CA
#Sheep_AV035   KVTQDQP PVSVQEKETV TLDCTYLFW YKQPSSGVMT FLINATEG CYSLNFQKAS KFITLTISA SQLEDSAVYF CA
#Mouse_ADV17   KVTQTQT SISVVEKTTV TMDCVYLFW YKQTASGEIV FLINATVG HYSLNFQKPK SSIGLIITA TQIEDSAVYF CA
#Mouse_AV19    GVEQ-PA KLMSVEGTFA RVNCTYLSW YQQREGQAPV FLSLKDSG HFSTFLSRSN GYSYLLLTE LQIKDSASYL CA
#Mouse_AV1     KVQQSPE SLSVPEGGMA SLNCTSFWW YRQHSGEGPK ALMDKKEG RFTAHLNKAS LHVSLHIRD SQPSDSALYF CA
#Mouse_AV3     SVTQPDA RVTVSQGASL QLRCKYLFW YVQYPRQGLL LLLVQGVN GFEAEFSKSN SSFHPRKAS VHWSDSAVYF CA
#Mouse_ADV4    SVTQTEG QVALSEEDFL TIHCNYLFW YVQYPGEGPQ FLFKGSSR GFEATYNKEA TSFHLQKAS VQESDSAVYY CA
#Mouse_ADV6    KTTQ-PD SMESTEGETV HLPCSYIYW YRQVPLQGPE YVTTNSMA FLAIASDRKS --STLILTH VSLRDAAVYH CI
#Mouse_ADV7    KVIQVWS TTSRQEGEKL TLDCSYLFW YKHLLSGEMV LLIIRRSG RYSVVFQKSR KSISLVIST LQPDDSGKYF CA
#Mouse_ADV10   QVQQSPA SLVLQEGENA ELQCNFLQW FYQSPGGSLV SLLTKHTG RLTSTTVTKE RRSSLHISS SQTTDSGTYL CA
#Mouse_AV8     SVTQTEG LVTVTEGLPV MLNCTYFFW YVQYLNEAPK LLLRTEHQ GFHATLHKSS SSFHLQKSS VQLSDSALYY CA
#Mouse_AV13    QVEQLPS ILRVQEGSSA SINCTYFPW YKQEPGENPK LIIRKQTQ GLIVLLDKKA KRFSLHITD TQPGDSAMYF CA
#Mouse_ADV11   QVEQSPS ALSLHEGTDS ALRCNFVQW FRQNSRGSLI SLFTKENG RLKSAFDSKE RYSTLHIRD AQLEDSGTYF CA
#Mouse_AV5     QVEQRPP HLSVREGDSA VITCTYFFW YKQEPGASLQ LLMINEGQ GFTVLLNKKD KRLSLNLTA AHPGDSAAYF CA
#Mouse_AV12    KTTQ-PP SMEAYEGQEV NVSCSYIYW YRQVPHQGPQ FIIVNEVA SLFISADRKL --STLSLPW VSLRDAAVYY CI
#Mouse_ADV2    QVRQSPQ SLTVWEGGTT VLTCSYFPW YQQFPGEGPA LLIKKEDG RFTTFFNKRE KKLSLHIID SQPGDSATYF CA
#Mouse_AV9     SVDQPDA HVTLSEGASL ELRCSYLFW YVQYPGQSLQ FLLVKGTK GFEAEFRKSN SSFNLKKSP AHWSDSAKYF CA
#Mouse_AV15    KVEQHES TLSVREGDSA VINCTYFPW YKQEAGKGLH FVIRKQSQ RLIVLLDKKA KRFSLHITA TQPEDSAIYF CA
#Mouse_AV14    QVEQSPQ SLVVRQGENC VLQCNYLRW FKQDTGKGLV SLTKTSNG RYSATLDKDA KHSTLHITA TLLDDTATYI CV
#Cattle_DV113  QVTQVQT AISSQVGQTV TLNCRY-FW YKAVPRGEMT FLIN-RDG RYSVNFQKAD KSISLIISA LQLEDSAKYF CA
#Cattle_DV116  KVTQDQS DLSSQVGQSV TLNCRY-FW YKQLPSGQMT YVINAKKD GYSVNFKKAD KSISLTISA LQLQDSAKYF CA
#Cattle_DV1.13 KVTQDQS DVSSHVGQSV TLNCRY-YW YKQLPSGQMT YVINARKD RYSVNFKKAD KSISLTISA LKLEDSAKYF CA
#Human_DV103   KVTQSSP DQTVASGSEV VLLCTY-FW YRIRPDYSFQ FVFDFTQG RFSVKHILTQ KAFHLVISP VRTEDSATYY CA
#Human_DV101   KVTQAQS SVSMPVRKAV TLNCLY-FW YKQLPSKEMI FLINAKSG RYSVNFKKAA KSVALTISA LQLEDSAKYF CA
#Human_DV102   ELVPEHQ TVPVSIGVPA TLRCSM-NW YRKTQGNTMT FIYPGFKD NFQGDIDIAK NLAVLKILA PSERDEGSYY CA
#Mouse_DV104   TVSQPQK KKSVQVAESA TLDCTY-FW YKQQGGQ-VT LVINATLN RFSVNFQKAA KSFSLEISD SQLGDAATYF CA
#Mouse_DV102   KTTQ-PD SMESTEGETV HLPCSH-YW YRQVPLQGPE YVTNTNSA FLAIASDRKS --STLILTH VSLRDAAVYH CI
#Mouse_DV105   TLTQSST DQTVASGTEV TLLCTY-FW YRKRPDRSFQ FILDFVQG RFSVKHSKAN RTFHLVISP VSLEDSATYY CA
#Mouse_DV101   VYLEVAK TFTVVAGDPA SFYCTV-SW YKKNGTNALF LVYDGGKS NLKGKINISK NQFILDIQK ATMKDAGTYY CG
#Rabbit_DV555  KVTQVQQ DIFLSEGSTA TLYCQY-FW YKQLSSGEII YVINAKKD RYSINFQKEA KSVSLTISA LQLGDSSKYL CA
#Rabbit_DV4    HSDPEPL GTGGGEWPGD DLLCTY-YW YREGQTTPLS SSCIG-FC SRSILCDAQT QTFHLVISA VRPEDSAVYY CA
#Rabbit_DV5    NVTQTQP EMSVQEAETA TLDCTY-FW YKQPPSGELV LIINATQN RFSVNFQKAS KSFSLKISD SQLGDAGMYL CA
#Sheep_DV5     KVTQAQT TVTGQEREAV TIGCTY-FW YRQFPGGRME FLINARRD RYSVNFQKGK KIISLTISS LHLADSAKYF CA
#Sheep_DV2     SVTQDQP DILSEVGKTV TLNCRY-FW YKQLPSGQMT YLINARDG RYSVNFKKAD KSISLTISA LQLEDSAKYF CA
#Sheep_DV4     KVTQNQP DISSQVGQSV TLNCQY-VW YKQLPSGQMT YLINARNG RYSVNFQKAD KSISLIISS LQLEDSAKYF CA
#Sheep_DV1.1   KVTQDQS DVSSQLGQSV TLNCQY-FW YKQLPSGQMT YIINARKD RYSVNFRKAD KSISLTISA LQLEDSAKYF CA
#Sheep_DV7     --IQDQT DIPGQLGQSV TLNCRY-FW YKLLPSGEMI YLINAKNG RYSVNIQKAQ KSISLTISD LQLEDSAEYF CA
#Sheep_DV6     KVIQDPP DIPSRVGESV TLNCRC-FW YKHLPSGEMI FLTR--DG HYSINFDRLS KSSSLTIST LQLEDSAKYF CA
#Sheep_DV3.2   VESADVP TVYKKEGESV TVECKF-YW YRQPSSGEMI YMIQTREG RYSVEFYKPN QMLKLTISA LKLSDSAVYF CA
 

Home | CV | Databases | IMEG Seminars | MEP-online | People | Publications | SoftwareText only version


| Laboratory of Masatoshi Nei |
| Department of Biology | Eberly College of Science |
| Institute of Molecular Evolutionary Genetics | Penn State |
2003 The Pennsylvania State University
This page was last updated 6/5/12 by T. Mazurczyk.