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Appendix


List of H3 Nucleotide Sequences Used

 
Species Accession H3Type Expression*   Species Accession H3Type Expression*
Animals                
Human 1 M26150 H3.1 D   Mouse 1 U62672 H3.1 D
2 X00090 H3.1 D   2 M32460 H3.1 D
3 Z80785 H3.1 D   3 M32462 H3.1 D
4 AL009179 H3.1 D   4 U62670 H3.1 D
5 Z83735 H3.1 D   5 X80328 H3.2 D
6 Z98744 H3.1 D   6 M33989 H3.2 D
7 Z83737 H3.1 D   7 U62669 H3.2 D
8 Z80786 H3.1 D   8 M32459 H3.2 D
9 M60746 H3.1 D   9 U62671 H3.2 D
10 X57128 H3.1 D   10 U62674 H3.2 D
11 X83550 H3.1 D   11 M32461 H3.2 D
12 Z46261 H3.1 D   12 U62675 H3.2 D
13 Z80784 H3.1 D   13 X13605 H3.3 I
14 Z49861 H3.1t T   14 Z85979 H3.3 I
15 Z48950 H3.3 I          
16 M11353 H3.3 I   Chicken 1 M61154 H3.2 D
17 M11354 H3.3 I   2 X62291 H3.2 D
          3 M61155 H3.2 D
Shrew Mouse 1 X80324 H3.1 D   4 U37579 H3.2 D
2 X80325 H3.1 D   5 U37578 H3.2 D
3 X80326 H3.2 D   6 X62292 H3.2 D
4 X80327 H3.2 D   7 J00869 H3.2 D
          8 Y00392 H3.3 I
Rat 1 L19706 H3.1 D   9 M11393 H3.3 I
2 X73683 H3.3 I   10 M11392 H3.3 I
                 
Hamster X80330 H3.2 D   Duck 1 X14732 H3.2 D
          2 M14396 H3.4 D
Rabbit X51897 H3.3 I          
          Frog 1 X03018 H3.2 D
Caenorhabditis
elegans
II 1
Z83245 H3.6 D   2 M21287 H3.2 D
II 2 Z83245 H3.6 D   3 X03017 H3.2 D
II 3 Z83245 H3.6 D   4 M21286 H3.2 D
II 4 Z81495 H3.6 D   5 X03104 H3.2 D
III 1 Z98866 H3.3c I   6 X72950 H3.2a D
III 2 Z38112 ? P   7 X72949 H3.2b D
III 3 Z38112 ? P          
IV 1 Z73102 H3.6 D   C. briggsae 1 G01B4 H3.6a D
IV 2 Z82271 H3.6 D   2 G01B4 H3.6a D
IV 3 Z68336 H3.6 D   3 G41K24 H3.6a D
IV 4 AF047656 H3.6 D   4 G14F21 H3.6a D
IV 5 U58750 H3.6 D   5 G45014 H3.6b D
V 1 U64843 H3.6 D          
V 2 U64843 H3.6 D          
V 3 U64845 H3.6 D          
V 4 Z93388 H3.6 D          
V 5 AC024696 H3.6 D          
V 6 Z74476 H3.6 P          
X 1 U28732 H3.3b I          
X 2 U41625 ? P          
                 
Plants                
Rice 1 U77296 H3.5 D   Alfalfa 1 X13673 H3.5b D
2 X13680 H3.5 D   2 X13674 H3.5b D
3 AB026295 H3.5 D   3 U09459 H3.5b D
4 X13678 H3.5 D   4 U09465 H3.5a I
5 AB026295 H3.5 D   5 U09458 H3.5a I
6 M15664 H3.5c D   6 U09464 H3.5a I
7 U25664 H3.5c D   7 U09461 H3.5a I
8 AF093633 H3.5A i   8 U09460 H3.5A I
9 AP000559 H3.5a I          
          Arabidopsis 1 AC003114 H3.5 D
Corn 1 X84377 H3.5 D   2 M17130 H3.5 D
2 M13379 H3.5 D   3 AL353995 H3.5 D
3 M35388 H3.5 D   4 AL161596 H3.5a I
4 M13378 H3.5 D   5 AL161596 H3.5a I
5 M36658 H3.5 D   Chlamydomonas 1 U16825 H3.5e D
          2 U16724 H3.5d D
Wheat X00937 H3.5b D   3 U16725 H3.5d D
                 
Rye Grass X79714 H3.5a I   Volvox 1 X06963 H3.5d D
          2 X06963 H3.5d D
Porteresia AF109910 H3.5a I          
          Asparagus X82414 H3.5 D
Parsley M77494 H3.5 D          
          Sainfoin AF026803 H3.5b D
Tomato X83422 H3.5a            
          Cotton AF024716 H3.5a I
Tobacco AB015760 H3.5a I          
                 
Fungi                
Schizosaccharomyces 1 AL157734 H3.7 I   Saccharomyces 1 X00724 H3.7a I
2 AL002072 H3.7 I   2 X00725 H3.7a I
3 AL096851 H3.7 I          
4 AL021766 H3.7 I   Aspergillus U12630 H3.7c I
                 
Neurospora X01612 H3.7b I          
                 
Protists                
Dicyostelium U76664 H3.9 ?   Leishmania. mexicana 1 AB029444 H3.11b I
          2 AB029444 H3.11a I
Phreatamoeba AF140033 H3.8 ?          
          L. braziliensis AF044682 H3.11 I
Euplotes U75429 H3.10 D          
          L. infantum X77591 H3.11c I
Giardia AF139875 H3.12 ?          
     

*D = replication-dependent; I = replication-independent; T = tissue specific; P = potential pseudogene

 

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| Laboratory of Masatoshi Nei |
| Department of Biology | Eberly College of Science |
| Institute of Molecular Evolutionary Genetics | Penn State |
2003 The Pennsylvania State University
This page was last updated 6/4/12 by T. Mazurczyk.