A Python script that implements the classifier SS-H12 of Harris and DeGiorgio (2019) for detecting shared selective sweeps, and classifying them as ancestral or covergenent, as well as hard or soft.

Results of genome scans for shared selective sweeps using SS-H12 as applied to nine pairs of 1000 Genomes Project populations in Harris and DeGiorgio (2019).
[Click to download scan results]

Please cite the following manuscript if using this software:
AM Harris, M DeGiorgio (2019) Identifying and classifying shared selective sweeps from multilocus data. bioRxiv

[Click to download manual]
[Click to download software (300 MB download including example data)]

On a UNIX system, extract the compressed files using the command
tar -xzvf SS-X12_program.tar.gz
Change directory to SS-X12_program using a command such as
cd SS-X12_program
The script will be located in the SS-X12_program directory

Software history
October 15, 2018 - Uploaded version 1.0 of the software and manual
April 5, 2019 - Added additional example input files