REFEREED JOURNAL ARTICLES 

62. Malvadkar, N., Dressick, W.J., Demirel, M.C. “An Electroless Method of Preparing Metalized Nanostructured Polymer Films for SERS Applications” submitted, 2009

61. Sekeroglu, K., Malvadkar N., Demirel, M.C., "Hydrogen Generation on Composite Cobalt/Parylene Films", submitted, 2009

60. Demirel, G., Dressick, W.J, Demirel, M.C., “Anistropic Wetting of Nanostructured Parylene Films”, submitted, 2009

59. Gozde I., Demirel, G, Gleason, K.K, Demirel, M.C., “Highly Swellable Free-Standing Hydrogel Nanotubes Forest”, submitted, 2009

58. Demirel, G., Malvadkar, N., Demirel, M.C., “Temperature-Dependent Wettability on Nanostructured Parylene Films”, submitted, 2009

57. Demirel, G., Anderson, M., Kao, P., Poss, M., Allara, D.L., Javed, A., Demirel M.C., “Molecular Probes for Viral Gene Detection using Highly Reproducible Substrates”,  submitted , 2009

56. Demirel, G., Malvadkar, N., Demirel, M.C., “Control of Protein Adsorption on Nanostructured Parylene Films”, submitted, 2009

55. Malvadkar, N., Dressick, W.J., Demirel, M.C. “Non-covalent Route for Controlled Morphology of Electroless Metal Films”, LANGMUIR, submitted, 2009

54. Wang, H., Kao, P., Bylander, J., Reeves, W.B., Demirel, M.C., “Urine Analysis of Diabetic Patients by Surface Enhanced Raman Spectroscopy”, JOURNAL of BIOMEDICAL OPTICS, submitted, 2009.

53. Demirel, G., Malvadkar, N., Demirel, M.C., “Control of protein adsorption onto core-shell tubular and vesicular structures of diphenylalanine/Parylene”, LANGMUIR, accepted, 2009

52. Demirel, G., Malvadkar, N., Demirel, M.C., “Template-based and Template-free Oblique Angle Polymerization”, THIN SOLID FILMS, accepted, 2009

51. So, E., Demirel M.C., Wahl, K.J,  “Mechanical Properties of Nanostructured Poly(P-xylylene) Films”, PHYSICAL REVIEW-D, accepted, 2009.

50. Demirel, M.C., Kao, P., Malvadkar, N., Wang, H., Poss, M., Allara, D.L. “Bio-Organism Sensing Via Surface Enhanced Raman Spectroscopy on Controlled Metal/Polymer Nanostructured Substrates”, BIOINTERPHASES, vol.4, pg. 35-41, 2009 PDF

49. Malvadkar, N., Dressick, W.J., Demirel, M.C., "Electroless deposition of Titania on Nanostructured Parylene Thin Films", JOURNAL of MATERIALS CHEMISTRY, Vol.19, pg. xx, 2009 PDF

48. Cetinkaya, M., Demirel M.C., "Bridging Experiments and Simulations in Oblique Angle Polymerization", J. CHEMICAL VAPOR DEPOSITION, Vol.15, pg. 1-5, 2009.PDF

47. Martin Palma, R, Wang, H., Demirel M.C., Pantano, C., “Surface Biofunctionalization of Nanostructured GeSbSe Chalcogenide Glass Thin Films”, J. NON-CRYSTALLINE SOLIDS, Vol. 355, pg. 208-212, 2009.PDF

46. Malvadkar, N., Mangan, A., Boduroglu, S., Wang, H., Demirel M.C., "A Template-Free Method of Creating Nanostructured Polymers", EUROPEAN COATING JOURNAL, Vol. 1, pg. 40-44, 2009.PDF

45. Kao, P., Malvadkar N., Wang, H., Allara, D.L., Demirel, M.C., “Surface Enhanced Raman Detection of Bacteria on Metalized Nanostructured Poly(p-xylylene) Films”  ADVANCED MATERIALS, Vol. 20, pg. 3562-3565, 2008.PDF

44. Malvadkar N., Park, S., Macdonald, M., Wang, H., Demirel, M.C., "Catalytic activity of cobalt deposited on nanostructured Poly(p-xylylene) films", JOURNAL of POWER SOURCES, Vol. 182, pg. 323-328, 2008. PDF

43. Demirel, M.C., “Emergent Properties of Spatially Organized Poly(P-xylylene) Films Fabricated by Vapor Deposition" COLLOIDS AND SURFACES A , Vol. 321, pg. 121-124, 2008.PDF

42. Gullapalli, R., Demirel, M.C., Butler P.J. ” Molecular dynamics simulation of long-chain carbocyanine dyes in a DPPC lipid bilayer”, PHYSICAL CHEMISTRY CHEMICAL PHYSICS, Vol. 10, pg 1-13, 2008. PDF

41. Cetinkaya, M., Malvadkar, N., Demirel, M.C., “Power-Law Scaling of Structured Poly(P-Xylylene) Films Deposited by Oblique Angle”, JOURNAL OF POLYMER SCIENCE PART B: POLYMER PHYSICS, Vol. 46, pg 640-648, 2008.PDF

40. Demirel, M.C., Cetinkaya, M., Singh, A., Dressick W.J., “A Non-Covalent Method for Depositing Nanoporous Metals via Spatially Organized Poly(P-xylylene) Films”, ADVANCED MATERIALS, Vol. 19, pg. 4495-4499, 2007.PDF

39. Samuel, B., Demirel, M.C., Haque, A.M., “High resolution deformation and damage detection using fluorescent dyes”, JOURNAL OF MICROMECHANICS AND MICROENGINEERING, Vol. 17, pg 2324–2327, 2007 PDF

38. Boduroglu, S., Cetinkaya, M., Dressick, W.J., Singh, A., Demirel, M.C., “Controlling the Wettability and Adhesion of Nanostructured Poly-(p-xylylene) Films”, LANGMUIR, Vol. 23, pg 11391-11395, 2007. PDF

37. Cetinkaya, M., Boduroglu, S., Demirel, M.C., "Growth of Nanostructured Thin Films of Poly(p-xylylene) Derivatives by Vapor Deposition“, POLYMER, Vol.48, pg. 4130-4134, 2007. PDF

36. Demirel, M.C., Cetinkaya, M, Boduroglu, S., Lakhtakia, A., “Spatially Organized Free-Standing Poly(P-xylylene) Nanowires Fabricated by Vapor Deposition ”, LANGMUIR, Vol. 23, pg. 5861-5863, 2007.PDF

35. Lakhtakia, A, Demirel, M.C., Horn, M.W., Xu, J, "Emerging Directions in Sculptured Thin Film Research", ADVANCES IN SOLID STATE PHYSICS, Vol. 46, pg 295-307, 2007. PDF

34. Demirel, M.C., So, E., Ritty, T., Naidu, S.H., Lakhtakia, A. “Nanoengineered Sculptured Thin Films for Fibroblast Cell Attachment and Growth,” JOURNAL OF BIOMEDICAL MATERIALS RESEARCH-B, Vol 81B, pg. 219-223, 2007 PDF

33. Cetinkaya, M.C., Zeytun, A., Sofo, J., Demirel, M.C., “How do insertions affect Green Fluorescent Protein”, CHEMICAL PHYSICS LETTERS, Vol. 419, pg. 48-54, 2006.PDF

32. Demirel, M.C.,  Keskin, O. "Protein Interactions and Fluctuations in a Proteomic Network using an Elastic Network Model", JOURNAL of BIO-MOLECULAR STRUCTURE and DYNAMICS, Vol. 22, Issue 4, pg 381-386, 2005.PDF

31. Demirel, M.C., Cherny, D. "Clustering and Diversity of Fluctuations for Proteins" JOURNAL OF NANOMEDICINE, vol 1, Issue 1, pg. 41-46, March 2005.PDF

30. Pursel, S., Horn, M.W., Demirel, M.C., Lakhtakia, A., “Growth of Sculptured Polymer Nanowire Assemblies by Combined Chemical and Physical Vapor Deposition”, Vol. 46, POLYMER, pg 9544-9548, 2005.PDF

29. Demirel, M.C., Lesk A. “Molecular Forces in Antibody Maturation”, Vol. 95, article no. 208106, PHYSICAL REVIEW LETTERS, 2005. PDF

28. Kuprat A.P., George, D.C., Straub, G.K., Demirel, M.C., "Modeling Microstructure Evolution in 3 Dimensions with Grain3D and LaGriT," Vol. 28, COMPUTATIONAL MATERIALS SCIENCE, 2003, pp 199-208.PDF

27. Demirel, M.C., Kuprat, A.P, George, D.C., and Rollett, A.D., "Bridging Experiments and Simulations in Microstructural Evolution," Vol. 90, Issue 1, PHYSICAL REVIEW LETTERS, 2003, pp 16106. PDF

26. Demirel, M.C., Kuprat, A.P, George, D.C., Straub, G.K. and Rollett, A.D., "Linking Experimental Characterization and Computational Modeling of Grain Growth in Al-Foil," INTERFACE SCIENCE, Vol. 10, Issue 2/3, 2002, pp 137 --142.PDF

25. Atilgan, A.R., Durell, S.R., Jernigan, R.L., Demirel, M. C., Keskin, O., Bahar, I., "Anisotropy of Fluctuation Dynamics of Protein with an Elastic Network Model," BIOPHYSICAL JOURNAL, Vol. 80, No. 1, 2001, pp.505 -- 515.PDF

24. Jernigan, R.L., Demirel, M. C., Bahar, I., "Relating Structure to Function through the Dominant Modes of Motion of DNA Topoisomerase II," INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Vol. 75, 1999, pp. 301 -- 312.PDF

23. Demirel, M. C., Atilgan, A.R., Jernigan, R L., Erman, B., Bahar, I., "Identification of Kinetically Hot Residues in Proteins," PROTEIN SCIENCE, Vol. 7, No. 12, 1998, pp. 2522 -- 2532 (Also appeared at the COVER PAGE). PDF

22. Bahar, I., Atilgan, A.R., Demirel, M. C., Erman, B., "Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability," PHYSICAL REVIEW LETTERS, Vol. 80, No. 12, 1998, pp. 2733 -- 2736.PDF

21. Sayar, M., Demirel, M. C., Atilgan, A.R., "Dynamics of Disordered Structures: Effect of Nonlinearity on the Localization," JOURNAL OF SOUND AND VIBRATION, Vol. 205, No. 3, 1997, pp. 372 - 379.PDF

20. Demirel, M. C., Sayar, M., Atilgan, A.R., "Statistical Mechanics of Fermi-Pasta-Ulam Chains with the Canonical Ensemble, " PHYSICAL REVIEW E, Vol. 55, No. 3, 1997, pp. 3727 -- 3731.PDF

ARTICLES PUBLISHED IN REFEREED PROCEEDINGS
19. Demirel, M.C. Kao, P., Malvadkar N., Wang, H., Allara D., Demirel M., A SERS Substrate for Detection of E.Coli on Nanostructured Poly(p-xylylene), in Nanotechnology 2008: Life Sciences, Medicine, and Bio Materials, Romanowicz B., Laudon M., (Eds.) CRC Press, 555-557, (2008). PDF

18. Demirel, M.C., Singh, A. “Novel Nanostructured Hydroxyl-Paracyclophane Thin Films”, ECS TRANSACTIONS, BIOLOGICAL NANOSTRUCTURES, MATERIALS, AND APPLICATIONS, Volume 3, Issue 19, pg 17-20, 2006.

17. Demirel, M.C., Parikh, A., Crespi, V., Reed, S., "Biologically Inspired Nanomaterials-A Conference Report", INTERNATIONAL SYMPOSIUM of INSTITUTE OF COMPLEX ADAPTIVE MATTER  Penn State, November 12-15, Published Online, http://arxiv.org/abs/0708.0164v1, 2005. PDF

16. Cetinkaya, M., Sofo, J., Demirel, M.C. "Protein simulations in confined environments" PROCEEDINGS OF SPIE, NANOMODELING; Vol. 5509, p. 133-137, 2004. PDF

15. Cetinkaya M., Salway,L., Keskin O, Demirel M.C., "Conformational Changes and Small World Association in Proteins", PROCEEDINGS OF INTERNATIONAL SYMPOSIUM ON NANOSCALE DEVICES, MATERIALS AND BIOLOGICAL SYSTEMS, 206th Electrochemical Society Meeting, Honolulu, pg. 1-6, 2004

14. Demirel, M.C., Kuprat, A.P., George, D.C., Straub, G.K., Misra, A. Alexander, K., Rollett, A.D., "Large Scale Statistics for Computational Verification of Grain Growth Simulations with Experiments", PROCEEDINGS OF MATERIAL RESEARCH SOCIETY, Spring Meeting, Vol. 731, 2002, W6.10.1-W 6.10.8 PDF

13. Demirel, M.C., Kuprat, A.P, George, D.C., El-Dasher B.S., Carlson, N.N., Straub, G.K. and Rollett, A.D., "Comparison of Experimental and Computational Aspects of Grain Growth in Al-Foil," PROCEEDINGS OF MATERIAL RESEARCH SOCIETY, Fall Meeting, Vol. 652, 2001, Y1.8.1-Y1.8.6 PDF

12. Demirel, M.C., Kuprat, A.P. , George, D.C., El-Dasher, B.S., Straub, B.S. and Rollett A.D., "Experimental Verification of Finite Element Simulation of Curvature Driven Grain-Growth in Al-foil," PROCEEDINGS OF THE FIRST JOINT INTERNATIONAL CONFERENCE ON GRAIN GROWTH, Aachen, Germany, Eds. G. Gottstein and D.A. Molodov, (Springer Verlag, 2001) pp. 297-302. PDF

11. Rolett, A.D., Yang, C.C., Mullins, W.W., Adams, B.L., Wu, C.T., Kinderlehrer, D., Taasan, S., Manolache, Liu, C., Livshits, I, Mason. D, Demirel, M.C., El-Dasher, B., Yang, W., "Grain Boundary property Detemination through Measurement of Triple Junction Geometry and Crystallography," PROCEEDINGS OF THE FIRST JOINT INTERNATIONAL CONFERENCE ON GRAIN GROWTH, Aachen, Germany, Eds. G. Gottstein and D.A. Molodov, (Springer Verlag, 2001) pp. 165-175. PDF

10. Alparslan, A. K., Sayar, M., Demirel, M. C., Atilgan, A. R., "Local Forecasting of Chaotic Time Series," PROCEEDINGS OF THE 15TH INTERNATIONAL SYSTEM DYNAMICS CONFERENCE, Edited by Y. Barlas, Istanbul, Turkey, August 19 --22, 1997, pp. 551 -- 554. PDF

9. Sayar, M., Demirel, M. C., Atilgan, A.R., "Dynamics of One-Dimensional Structures with Designed-in Disorder," PROCEEDINGS OF THE 20TH CONGRESS OF THE INTERNATIONAL COUNCIL OF THE AERONAUTICAL SCIENCES, Sorrento, Italy, September 8 -- 13, 1996, Vol. 2, pp. 1418 -- 1425. PDF

PARTS OF BOOKS

8. Malvadkar, N., Ulizio, M., Lowman, J., Demirel, M.C., “Functional Nanostructured Polymer-Metal Interfaces”, VIRTUAL TESTING and PREDICTIVE MODELING, B. Farahmand, Ed., Springer Publishing Company, ISBN: 978-0-387-95923-8, 2009. PDF

7. Demirel, M.C., Moran Lopez, J.L., DeLong, H., Rusling, R., “Biological Nanostructures, Materials, and Applications”, ECS TRANSACTIONS, Biological Nanostructures, Materials, and Applications, Volume 3, Issue 19, Preface, 2006. PDF

6. Demirel, M. C., El-Dasher B.S., Adams B.L., Rollett A.D.,  "Studies on the Accuracy of Electron Backscatter Diffraction Measurements," ELECTRON BACKSCATTER DIFFRACTION IN MATERIALS SCIENCE, A. J. Schwartz, M. Kumar, and B. L. Adams, Eds., Kluwer Academic/Plenum Publishers, New York, Chapter 6, 2000, pp. 65 - 74.PDF

5. Sayar, M., Demirel, M. C., Atilgan, A.R., "Some Observations on the Nonclassical Behavior of Structures," V.Yerlici - ENGINEERING AND EDUCATION, A Volume Honoring Prof. Dr. Vedat Yerlici, Edited by G. A. Altay, May 22, 1997, pp. 347 -- 359. PDF

PATENTS

4. Demirel M.C., Singh, A., Dressick, W.J., “NANOPOROUS THIN FILMS AND MULTI-FUNCTIONAL LAYERS VIA  SPATIALLY ORGANIZED POLYMERS” USPTO, Application number: 20080268226

3. Demirel M.C., Lakhtakia, A “METHOD AND SYSTEMS FOR FORMING AND USING NANOENGINEERED SCULPTURED THIN FILMS”, USPTO, Application number: 20070148206

2. Dressick, W.J., Demirel, M.C., Singh., A., “HYDROPHOBIC NANOSTRUCTURED THIN FILMS” USPTO, Application number: 20090269587. 

1. Demirel M.C., Dressick, W.J., Allara, D.L., "SURFACE ENCHANCED RAMAN DETECTION ON METALLIZED NANOSTRUCTURED POLYMER FILMS", USPTO, Application Number: 20090257056