Software
Downloadable Software/Scripts
Basic Tools: A list of basic perl scripts that are useful for manipulating
sequence information in a more general fashion and creating a pipeline.
>These perl scripts are designed to be run from the Windows
command-prompt (Vista/7) and have standard Unix/DOS-like options
functunality (e.g. C:>script1.exe -i input.txt -o output.txt etc.).
>Both pre-packaged executables (exe) and code (pl) are available for
most of the scripts. Executables are optimized for 64-bit Windows
and may or may not function on 32-bit systems.
>All scripts include a help option (e.g. C:>script1.exe -h) for a
general description of function followed by option list.
>Contact author for bugs, comments, or questions: jcv128@psu.edu
Notes:
Pipeline Scripts: A list of perl scripts that serve a primary and/or specific
role in a sequence filtering and annotation pipeline.
Betas: Possibly useful but unfinished. Also home of SNPHunter, which is no
longer really a beta.
