Software

Downloadable Software/Scripts

Basic Tools: A list of basic perl scripts that are useful for manipulating sequence information in a more general fashion and creating a pipeline.

>These perl scripts are designed to be run from the Windows command-prompt (XP/Vista) and have standard Unix/DOS-like options functunality (e.g. C:>script1.exe -i input.txt -o output.txt etc.). >Both pre-packaged executables (exe) and code (pl) are available for most of the scripts. >All scripts include a help option (e.g. C:>script1.exe -h) for a general description of function followed by option list.

Notes:

Pipeline Scripts: A list of perl scripts that serve a primary and/or specific role in a sequence filtering and annotation pipeline.

Other Scripts: A list of perl scripts that may or may not be useful.