My teaching belief is best summarized by the Feynman quote: What I cannot create, I do not understand. Therefore I devise course topics that demonstrate realistic data analysis scenarios that we typically encounter at the Bioinformatics Consulting Center.
Applied Bioinformatics, Fall 2014, Tuesday/Thursday 2:30-3:20 in 106 Wartik Lab
For 2014 most of the course has been redesigned and rewritten to focus on the genomic data analysis of the Ebola virus responsible for 2014 West Africa Ebola virus outbreak
Graduate Certificate in Applied Bioinformaticsoffered by the World Campus. Read the press release.
Previous courses can be accessed on the Lectures page. I have taught scientific programming and biological data analysis courses for over six years. The courses that I developed have been well received, students have consistently rated them among the top 5% graduate courses at Penn State.
I am actively involved in designing, supervising and implementing diverse biological data analyses in collaboration with life science researchers. Through these experiences I have learned to respect the complexity and challenges that life sciences pose for computational sciences. My work typically falls into the following categories:
Modern life sciences research increasingly relies on information technology: data storage, custom algorithms, advanced search and query mechanisms, streamlining recurring tasks, presentation and visualization interfaces. I'm most interested in applying modern and sophisticated computational solutions to diverse biological problems.
I have published more than 30 research papers in different fields of science: Physics, Computer Science and Biology. Over the years these works have collected more than 5000 citations.
At the end of 2009 I have created BioStars, a question and answer site for biologists, bioinformaticians and everyone interested in data analysis. By today, thanks to the superb user base that found a home there, the site has grown into the most popular bioinformatics site in the world. As of August 2014 the site is reaching over 1 million unique users per year! Users on the site have created over one hundred thousand (!) posts that cover all aspects of bioinformatics data analytics. Visit BioStar!
The software that this site runs on has been released to the public with a free, open source license and has been adopted by several other scientific projects.
I am the director of the Bioinformatics Consulting Center at Penn State, an organization that offers bioinformatics data analysis services for data generated by high throughput sequencing instrumentation. Our services range from routine data manipulation steps to developing novel, domain specific methodologies. Our center is also in charge of distributing and managing the sequencing data produces by the Penn State Sequencing Facilities.
Our center is less than two-year old yet our impact to Penn State grows every day. Just in the past year researchers collaborating with us have submitted over 10 research papers and our assistance has been instrumental in the successful funding for four new grant applications. Currently we have more than a dozen active collaborations and during the last year we have interacted with over 50 individuals: principal investigators, researchers, postdocs and students.
Created by Istvan Albert • Last updated on Thursday, September 04, 2014 • Site powered by PyBlue