| Open space. | |||
| Rack A (Dave's
rack):
1. DSG Antibodies #1 (Pol II antibody); 2. GAGA factor Ab Box; 3. Autin's transcription factors; 4. DSG antibodies #2; 5. DSG Expression #1; 6. DSG Proteins #1; 7. DSG antibodies #3; 8. GAGA factor; 9. Conaway's general factors; 10. Bacteria Strains #1; 11. Austin's 2nd shipment of factors; 12. Gilmour's TFIID; 13. Price/Greenleaf; 14. RNA polymerase II 15. Competent BL21(DE3) Missing boxes:
|
Rack B
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13.Dave Temp: Emanuel's cells: IIB, dTBP, numerous hsp70 promoters from deletion work. 14. Gregory's IIB from Fall 94, column fractions. 15. Gregory's IIB from Fall 94 16. FITC labelled secondaries and Gal4 Ab |
Rack C
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
Rack D
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
| Rack E (Larry's rack)
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
Rack F (Larry's rack plus other stuff)
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
Rack G
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
Rack H
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
| Rack I
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
Rack J
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
Rack K
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
Rack L
1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. 15. 16. |
| Bottom row reserved for autoradiograms | |||
DSG
Antibodies #1:
Notes: All of these pol II antibodies were prepared from
injection done during the Summer of 1992 with one rabbit.
1. Pol II preimmune serum; 5/29/92; Rabbit # 5277
2. Pol II preimmune serum; 5/29/92; Rabbit # 5277
3. Pol II preimmune serum; 5/29/92; Rabbit # 5277; 100ul
4. Pol II preimmune serum; 5/29/92; Rabbit # 5277; 100ul
5. Pol II preimmune serum; 5/29/92; Rabbit # 5277; 100ul
6. Pol II preimmune serum; 5/29/92; Rabbit # 5277; 100ul
7-21. Pol II serum, first bleed; Rabbit # 5277
22-36. Pol II serum, 2nd bleed; Rabbit # 5277
37-81. Pol II serum, final bleed; Rabbit # 5277; inadvertantly
labeled 9/93
13. TBP rabbit serum, from Hoey/Tjian, 1992
14. TBP rabbit serum, from Hoey/Tjian, 1992
15. TBP rabbit serum, from Hoey/Tjian, 1992
16. TBP rabbit serum, from Hoey/Tjian, 1992
17. TBP rabbit serum, from Hoey/Tjian, 1992
18. TBP rabbit serum, from Hoey/Tjian, 1992
19. TBP rabbit serum, from Hoey/Tjian, 1992
20. TBP rabbit serum, from Hoey/Tjian, 1992
21. TBP rabbit serum, from Hoey/Tjian, 1992
22. TBP rabbit serum, from Hoey/Tjian, 1992
23. TBP rabbit serum, from Hoey/Tjian, 1992
24. Rabbit preimmune for Hoey/Tjian TBP serum, #9307
25. HSF antibody, 944-3, lyophilized powder from 50 ul,
Wu/Tsukiyama, 2/16/95
26. HSF antibody, 944-3, lyophilized powder from 50 ul,
Wu/Tsukiyama, 2/16/95
27.
28.
29.
30. TFIIB rabbit serum from Kadonaga, (obtained by P. Emanuel)
31. GAGA rat serum from Ganock/Elgin, Fall 93 (NM)
32. GAGA rat serum from Ganock/Elgin, Fall 93 (NM)
33. GAGA rat serum from Ganock/Elgin, Fall 93 (NM)
34. GAGA rat serum from Ganock/Elgin, Fall 93 (1H)
35. GAGA rat serum from Ganock/Elgin, Fall 93 (1H)
36. GAGA rat serum from Ganock/Elgin, Fall 93 (1H)
37. GAGA rat serum from Ganock/Elgin, Fall 93 (1T)
38. GAGA rat serum from Ganock/Elgin, Fall 93 (1T)
39. GAGA rat serum from Ganock/Elgin, Fall 93 (1T)
40. GAGA rat preimmune serum from Ganock/Elgin, Fall 93
(1-H), 50% ethylene glycol
41. GAGA rat preimmune serum from Ganock/Elgin, Fall
93 (1-H), 50% ethylene glycol
42. GAGA rat preimmune serum from Ganock/Elgin, Fall
93 (1-H), 50% ethylene glycol
43. GAGA rat preimmune serum from Ganock/Elgin, Fall 93
(2-H), 50% ethylene glycol
44. GAGA rat preimmune serum from Ganock/Elgin, Fall
93 (2-H), 50% ethylene glycol
45. GAGA rat preimmune serum from Ganock/Elgin, Fall
93 (2-H), 50% ethylene glycol
46. GAGA rabbit serum from Wu, Spring 94
47. GAGA rabbit serum from Wu, Spring 94
48. GAGA rabbit serum from Wu, Spring 94
49. GAGA rabbit serum from Wu, lyophilized
50. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
51. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
52. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
53. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
54. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
55. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
56. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
57. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
58. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
59. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
60. TAFII250 mouse monoclonal, 2B2, Weinzerl/Tjian, 94,
culture media
61. TAFII250 mouse monoclonal, 30H9, Weinzerl/Tjian, 94,
culture media
62. TAFII250 mouse monoclonal, 30H9, Weinzerl/Tjian,
94, culture media
63. TAFII250 mouse monoclonal, 30H9, Weinzerl/Tjian,
94, culture media
64. TAFII250 mouse monoclonal, 30H9, Weinzerl/Tjian,
94, culture media
65. TAFII250 mouse monoclonal, 30H9, Weinzerl/Tjian,
94, culture media
66. TAFII250 mouse monoclonal, 30H9, Weinzerl/Tjian,
94, culture media - transferred to Baiyong, 7/28/94
67. TAFII150 rabbit serum, 823, Verrijzer/Tjian, 94
68. TAFII150 rabbit serum, 823, Verrijzer/Tjian, 94
69. TAFII150 rabbit serum, 823, Verrijzer/Tjian, 94
70. Drosophila PolII goat IgG fraction from Anro Greenleaf,
63N IgG
71. Drosophila PolII goat IgG fraction from Anro Greenleaf,
63N IgG
72. Drosophila PolII goat IgG fraction from Anro Greenleaf,
63N IgG
73. Drosophila TFIIB rabbit serum from Wampler/Kadonaga
74. Drosophila TFIIB rabbit serum from Wampler/Kadonaga
75. Drosophila TFIIB rabbit serum from Wampler/Kadonaga
76. Drosophila TFIIB rabbit serum from Wampler/Kadonaga
77.
78.
79.
80.
81.
Slots 1-9, Lambda repressor rabbit serum, 7/28/82
Slots 10-23, E. coli RNA polymerase rabbit serum, 3/23/82
24. H4 rabbit serum, (Ra 447c) D. Stollar, 7/18/83
25. H3/H4 rabbit serum, (Ra 372d) D. Stollar, 7/18/83
Slots 26-31, TBP rabbit serum, #5278, Peter Emanuel, 1/28/93 (1ml)
Slots 32-50, TBP rabbit serum, #5317, Peter Emanuel, 5/5/93 (1ml)
Slots 51-64, TAF250 monoclonal, 30H9, hybridoma supernatant from Tjian lab, provided 5/19/00 by P. Verrijzer
Slots 65-78, TAF250 monoclonal, 2B2, hybridoma supernatant from Tjian lab, provided 5/19/00 by P. Verrijzer
79. TAF150 polyclonal made in rabbit #823 in Tjian's lab. Provided 5/19/00 by P. Verrijzer, designated 1 on the lid and should be good.
80. TAF150 polyclonal made in rabbit #823 in Tjian's lab. Provided 5/19/00 by P. Verrijzer, designated 2 on the lid, this is the bleed-out and apparently has high background.
81. TAF150 polyclonal made in rabbit #824 in Tjian's lab. Provided 5/19/00 by P. Verrijzer, designated 3 on lid, this is a test bleed and should be good.
Slots 1-4: pre-immune, 1.3ml/tube, 3/20/95
Slots 5-8: first bleed sera, 1.3ml/tube, 4/17/95 - red
label
Slots 9-12: second bleed sera, 1.3ml/tube, 5/3/95 - green
label
Slots 13-62: Final bleed sera, 1.3ml/tube, 5/31/95
Slots 71-81: Final bleed sera, 0.1 ml/tube, 5/31/95
2. dTBP expression, pAR3038 dTBP, glycerol stock in BL21
DE3 (Tjian)
3. dTBP expression, pAR3038 dTBP, glycerol stock in BL21
DE3 (Tjian)
4. space for dTBP DNA
5. dTFIIB expression, pET dTFIIB2, glycerol stock in BL21
DE3 (Kadonaga)
6. dTFIIB exoression, pET dTFIIB2, glycerol stock in
BL21 DE3 (Kadonaga)
7. pET dTFIIB2, 20 ng/ul
8. pAR3040 56KTFIIE, (human) glycerol stock in TG2 from
Tjian via Rick Austin/Biggin
9. pAR3040 34KTFIIE, (human) glycerol stock in TG2 from
Tjian via Rick Austin/Biggin
10. pET-RAP74, (human) glycerol stock in unknown strain
from Sherm Weissman via Austin
11. pET-RAP30, (human) glycerol stock in unknown strain
from Sherm Weissman via Austin
12. Drosophila GAGA factor: pARGAGA, DNA at 0.25 mg/ml
from Soeller via Granock/Elgin
13. Drosophila GAGA factor: pETGAGA, DNA at 0.95 mg/ml
from Kadonaga via Granock/Elgin
14. Drosophila GAGA factor: pETGAGA, DNA at 0.95 mg/ml
from Kadonaga via Granock/Elgin
15. Drosophila heat shock factor: pHSF20, DNA at 1 mg/ml
from C. Wu
16. pEZZ18, DNA at 0.5 mg/ml from Pharmacia, for Protein
A-like fusions.
17. pEZZ-GAGA (A13), miniprep DNA, putative GAGA fusion
by Gilmour (summer 94)
18. pEZZ-GAGA (A15), miniprep DNA, putative GAGA fusion
by Gilmour (summer 94)
19. pEZZ-GAGA rev (A5), miniprep DNA, putative GAGA fusion
by Gilmour
20. pEZZ-GAGA rev (A16), miniprep DNA, putative GAGA
fusion by Gilmour
21.Micrococcal nuclease: pFOG 301, DNA 0.5mg/ml from David
Shortle
22. GST/protein A fusion: pAGEX2T, DNA 0.5 mg/ml from
Alan Wildeman
23. dHSF from baculovirus, Mary Fernandez/Lis, 9/92, in
20 mM Hepes, 10%glycerol, 0.3 M NaCl, not homogeneous.
24. dHSF from baculovirus, Mary Fernandez/Lis, 9/92
25. dHSF from baculovirus, Mary Fernandez/Lis, 9/92
26. dHSF from baculovirus, Mary Fernandez/Lis, 9/92
27. dHSF from baculovirus, Mary Fernandez/Lis, 9/92
28. dHSF from baculovirus, Mary Fernandez/Lis, 9/92
29. dHSF from baculovirus, Mary Fernandez/Lis, 9/92
30. dHSF from baculovirus, Mary Fernandez/Lis, 9/92
31. dHSF from baculovirus, Mary Fernandez/Lis, 9/92
32-52. dTFIIB, Walters, Emanuel and Sypes, Hydroxyapatite fraction 23, quality unknown, Derived from Kadonaga's pET dTFIIB2.
53-71. dTFIIB, Walters, Emanuel and Sypes, Hydroxyapatite fraction 24, 130 ng/ul in 100 mM HGKEDP, 90% pure but may have a little contaminating endonuclease.
72. Avidin DN, A-3100, Vector Lab, 1 mg/ml, spring 94
73. Protein G- Biotin, Sigma, PB045, 2 mg/ml, spring
94
74-81. dTFIIB, Walters, Emanuel and Sypes, Hydroxyapatite
fraction 23, quality unknown
8-28. pol II, ~50ng/ul, Greenleaf-type prep, tube labelled at 6/28, see notebook 8/5/92, mostly IIb form.
29.
30. dTBP from Hoey/Tjian, 1992; 300 ng/ul, 30% pure
31. dTBP from Hoey/Tjian, 1992; 300 ng/ul, 30% pure
32. dTBP from Hoey/Tjian, 1992; 300 ng/ul, 30% pure
33. dTBP from Hoey/Tjian, 1992; 300 ng/ul, 30% pure
34.
35. dTBP from Emanuel, 9/9/92?, TBP 26
36. dTBP from Emanuel, 9/9/92?, TBP 26, probably 400
mM step
37. dTBP from Emanuel, 9/9/92?, TBP 26, probably 400
mM step
38. dTBP from Emanuel, 9/9/92?, TBP 26, probably 400
mM step
39. dTBP from Emanuel, 9/9/92?, TBP 26, probably 400
mM step
40. dTBP from Emanuel, 9/9/92?, TBP 26, probably 400
mM step
41. dTBP from Emanuel, 9/9/92?, TBP 26, probably 400
mM step
42. dTBP from Emanuel, 9/9/92?, TBP 26, probably 400
mM step
43.
44. dTBP from Emanuel, 9/9/92?, TBP 34, probably 1 M
step
45. dTBP from Emanuel, 9/9/92?, TBP 34, probably 1 M
step
46. dTBP from Emanuel, 9/9/92?, TBP 34, probably 1 M
step
47. dTBP from Emanuel, 9/9/92?, TBP 34, probably 1 M
step
48. dTBP from Emanuel, 9/9/92?, TBP 34, probably 1 M
step
49. dTBP from Emanuel, 9/9/92?, TBP 34, probably 1 M
step
50. dTBP from Emanuel, 9/9/92?, TBP 34, probably 1 M
step
51. dTBP from Emanuel, 9/9/92?, TBP 34, probably 1 M
step
52.
53. dTBP from Emanuel, TBP16, 1 M step
54. dTBP from Emanuel, TBP16, 1 M step
55. dTBP from Emanuel, TBP16, 1 M step
56. dTBP from Emanuel, TBP17, 1 M step, adjacent fraction
to previous one.
1. P11 500, ~150 ul, P. Emanuel, used in G&D paper,
Spring 94
2. P11 500, ~150 ul, P. Emanuel, used in G&D paper,
Spring 94
3. P11 500, ~150 ul, P. Emanuel, used in G&D paper,
Spring 94
4. P11 500, ~150 ul, P. Emanuel, used in G&D paper,
Spring 94
5. P11 500, ~150 ul, P. Emanuel, used in G&D paper,
Spring 94
6. P11 500, ~150 ul, P. Emanuel, used in G&D paper,
Spring 94
7. P11 500, ~150 ul, P. Emanuel, used in G&D paper,
Spring 94
8. 100 ul P11, 12/3/92, P. Emanuel, used in PNAS paper,
Fall 93
9. 100 ul P11, 12/3/92, P. Emanuel, used in PNAS paper,
Fall 93
10. TATA complex, (P11), 3/8/92, D. Gilmour, successfully
used by many.
11. TATA complex, (P11), 3/8/92, D. Gilmour, successfully
used by many.
12. TATA complex, (P11), 3/8/92, D. Gilmour, successfully
used by many.
13. TATA complex, (P11), 3/8/92, D. Gilmour, successfully
used by many.
14. TATA complex, (P11), 3/8/92, D. Gilmour, successfully
used by many.
15. TATA complex, (P11), 6/91, D. Gilmour, successfully
used in gel shift 7/29/94
16. TATA complex, (P11), 6/91, D. Gilmour, successfully
used in gel shift 7/29/94
17. TATA complex, (P11), 6/91, D. Gilmour, successfully
used in gel shift 7/29/94
18. TATA complex, (P11), 6/91, D. Gilmour, successfully
used in gel shift 7/29/94
19. TATA complex, (P11), 6/91, D. Gilmour, successfully
used in gel shift 7/29/94
20. TATA complex, (P11), 6/91, D. Gilmour, successfully
used in gel shift 7/29/94
21. TATA complex, (P11), 6/91, D. Gilmour, successfully
used in gel shift 7/29/94
22-72. 4th P-11, TATA complex, M. Sypes, early 94, 2.8 mg/ml, 50% of the TAF250 appears to be degraded to 180 kd. Successfully used in later part of Sypes thesis.
1. Mut L, competant cells from Washington University,
for use in site directed mutagenesis.
2. hsp70 16mer clone in XBS, -194 to +84, from Mike Sypes.
3. *TATA hsp70 4mer clone, from Mike Sypes, probably
in XBS.
4. JM109
5. JM109
6. HB101
7. HB101
8. HB101
9. HB101
10. HB101
11. HB101
12. HB101
13. HB101
14. HB101
15. HB101
16. HB101
17. HB101
18. HB101
19. HB101
20. DH5a
21. DH5a
22. DH5a
23. Car20ZT.2 -89
24. Car20ZT.2 -89
25. Car20ZT.2 -190
26. Car20ZT.2
27. Car20
28. Car20
29. pUC13
30. pUC13
31. P/T (hsp70 Promoter/Terminator)
32. P/T (hsp70 Promoter/Terminator)
33. P/E/T (hsp70 promoter/HA epitope/Terminator)
34. P/E/T (hsp70 promoter/HA epitope/Terminator)
35. PHET (hsp70 promoter/*C H1/HA epitope/Terminator)
36. PHET (hsp70 promoter/*C H1/HA epitope/Terminator)
37. Hsp70 S/X 16 WT from Beverly Purnell
38. Car20 -190 +89 (I'm not sure what they are because
they don't have the ZT)
39. Car20 -190 +89 (I'm not sure what they are because
they don't have the ZT)
40. Car20 -190 +89 (I'm not sure what they are because
they don't have the ZT)
41. Car20 -190 +89 (I'm not sure what they are because
they don't have the ZT)
42. Nuclear Localization Car20ZT.2 -89 (8/13/92;
#1)
43. Nuclear Localization Car20ZT.2 -89 (8/13/92;
#2)
44. Nuclear Localization Car20ZT.2 -89 (8/13/92;
#3)
45. Nuclear Localization Car20ZT.2 (8/13/92; #4)
46. Nuclear Localization Car20ZT.2 (8/13/92; #5)
47.
48.
49.
50.
51.
52.
53.
54.
55.
56.
57.
58.
59.
60.
61.
62.
63.
64.
65.
66.
67.
68.
69.
70.
71.
72.
73. Gal4 1-94 (Joe Reese)
74. Gal4 1-147 VP16 (Joe Reese)
75. GPP78 (Chicca)
76. GPP93 (Chicca)
77. Gal4 1-147 (John Chicca)
78. Gal4 1-147 AH (Joe Reese)
79. Gal4-VP16 (John Chicca)
80.
81.
1. Dis79 S1 probe for Adh distal 10uM
2. pD-33CAT Adh distal 0.68 ug/ul
3.
4. TBP 150ng/ul
5. TBP 150ng/ul
6. TBP 150ng/ul
7. TBP 150ng/ul
8. Pol II 2/10/95
9. Pol II 2/10/95
10. Pol II 2/10/95
11. Pol II 2/10/95
12. Pol II 2/10/95
13. Pol II 2/10/95
14. Pol II 2/10/95
15. IID (LS) 2/8/95
16. IID (LS) 2/8/95
17. IID (LS) 2/8/95
18. IID (LS) 2/8/95
19. IID (LS) 2/8/95
20. IID (LS) 2/8/95
21. IID (LS) 2/8/95
22. IIH 7/93
23. IIH 7/93
24. IIH 7/93
25. IIH 7/93
26. IIH 7/93
27. IIH 7/93
28. IIH 7/93
29. Prox71 S1 probe for Adh proximal, 18.6uM
30. pP*5'-55, 1.55 ug/ul
31. IIF 4/3/95
32. IIF 4/3/95
33. IIF 4/3/95
34. IIF 4/3/95
35. IIF 4/3/95
36.
37. rIIE 5/94
38. rIIE 5/94
39. rIIE 5/94
40. rIIE 5/94
41. rIIE 5/94
42. rIIE 5/94
43. 5% PVA, 5%PEG
44.
45.
46.
47. rIIB 100ng/ul
48. rIIB 100ng/ul
49. rIIB 100ng/ul